Fitness for 5 genes in Dickeya dianthicola 67-19

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500 ntHGI48_RS18175 and HGI48_RS18180 are separated by 64 nucleotidesHGI48_RS18180 and HGI48_RS18185 are separated by 150 nucleotidesHGI48_RS18185 and HGI48_RS18190 are separated by 112 nucleotidesHGI48_RS18190 and HGI48_RS18195 overlap by 1 nucleotides HGI48_RS18175: HGI48_RS18175 - bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA, at 4,078,119 to 4,078,772 _RS18175 HGI48_RS18180: HGI48_RS18180 - co-chaperone DjlA, at 4,078,837 to 4,079,859 _RS18180 HGI48_RS18185: HGI48_RS18185 - LPS assembly protein LptD, at 4,080,010 to 4,082,421 _RS18185 HGI48_RS18190: HGI48_RS18190 - peptidylprolyl isomerase SurA, at 4,082,534 to 4,083,826 _RS18190 HGI48_RS18195: HGI48_RS18195 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 4,083,826 to 4,084,827 _RS18195
Group Condition HGI48_RS18175 HGI48_RS18180 HGI48_RS18185 HGI48_RS18190 HGI48_RS18195
control PDB -0.5 -0.3 N.D. N.D. -1.6
control PDB -0.8 -0.3 N.D. N.D. -1.2
carbon source M9+glycerol -1.7 +0.0 N.D. N.D. -0.4
control PDB +0.1 -0.5 N.D. N.D. -1.7
plant Upstate -1.0 -0.7 N.D. N.D. -0.2
control PDB -0.2 -0.2 N.D. N.D. -1.2
plant Upstate -1.0 -0.4 N.D. N.D. -0.2
plant Norland -0.6 -0.1 N.D. N.D. -0.7
carbon source M9+glycerol -0.5 -0.7 N.D. N.D. -0.2
control PDB +0.4 -0.2 N.D. N.D. -1.4
control PDB -0.0 -0.3 N.D. N.D. -0.9
carbon source M9+glycerol -1.3 +0.3 N.D. N.D. -0.2
plant Atlantic -0.0 -0.7 N.D. N.D. -0.4
plant Norland -0.8 +0.1 N.D. N.D. -0.3
plant Upstate -0.7 -0.6 N.D. N.D. +0.2
plant Atlantic -0.1 -0.9 N.D. N.D. -0.1
plant Atlantic +0.5 -0.4 N.D. N.D. -1.0
control LB -0.4 -0.3 N.D. N.D. -0.2
plant Atlantic -0.3 -0.5 N.D. N.D. -0.1
carbon source M9+polygalacturonate -0.5 +0.0 N.D. N.D. -0.4
plant Upstate +0.2 -0.4 N.D. N.D. -0.6
plant Norland +0.2 -0.3 N.D. N.D. -0.5
plant Atlantic +0.4 -0.2 N.D. N.D. -0.6
carbon source M9+glycerol -0.6 +0.4 N.D. N.D. -0.0
carbon source M9+sucrose -0.7 -0.4 N.D. N.D. +0.9
plant Upstate +0.8 -0.6 N.D. N.D. -0.3
carbon source M9+glycerol -0.5 +0.4 N.D. N.D. -0.1
plant Norland -0.5 +0.2 N.D. N.D. +0.3
carbon source M9+sucrose -1.2 -0.1 N.D. N.D. +1.6
carbon source M9+sucrose +0.4 -0.2 N.D. N.D. +0.7
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