Fitness for 5 genes in Dickeya dianthicola 67-19

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Top 30 experiments (either direction), sorted by average fitness

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500 ntHGI48_RS18170 and HGI48_RS18175 are separated by 63 nucleotidesHGI48_RS18175 and HGI48_RS18180 are separated by 64 nucleotidesHGI48_RS18180 and HGI48_RS18185 are separated by 150 nucleotidesHGI48_RS18185 and HGI48_RS18190 are separated by 112 nucleotides HGI48_RS18170: HGI48_RS18170 - RNA polymerase-associated protein RapA, at 4,075,152 to 4,078,055 _RS18170 HGI48_RS18175: HGI48_RS18175 - bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA, at 4,078,119 to 4,078,772 _RS18175 HGI48_RS18180: HGI48_RS18180 - co-chaperone DjlA, at 4,078,837 to 4,079,859 _RS18180 HGI48_RS18185: HGI48_RS18185 - LPS assembly protein LptD, at 4,080,010 to 4,082,421 _RS18185 HGI48_RS18190: HGI48_RS18190 - peptidylprolyl isomerase SurA, at 4,082,534 to 4,083,826 _RS18190
Group Condition HGI48_RS18170 HGI48_RS18175 HGI48_RS18180 HGI48_RS18185 HGI48_RS18190
plant Upstate -0.3 -1.0 -0.7 N.D. N.D.
plant Upstate -0.6 -1.0 -0.4 N.D. N.D.
plant Upstate -0.5 -0.7 -0.6 N.D. N.D.
carbon source M9+sucrose -0.3 -1.2 -0.1 N.D. N.D.
carbon source M9+glycerol +0.1 -1.7 +0.0 N.D. N.D.
plant Atlantic -0.6 -0.1 -0.9 N.D. N.D.
carbon source M9+glycerol -0.3 -1.3 +0.3 N.D. N.D.
plant Norland -0.4 -0.8 +0.1 N.D. N.D.
plant Atlantic -0.5 -0.0 -0.7 N.D. N.D.
carbon source M9+sucrose -0.0 -0.7 -0.4 N.D. N.D.
plant Norland -0.3 -0.6 -0.1 N.D. N.D.
carbon source M9+glycerol +0.2 -0.5 -0.7 N.D. N.D.
plant Norland -0.3 -0.5 +0.2 N.D. N.D.
plant Upstate -0.4 +0.2 -0.4 N.D. N.D.
plant Norland -0.4 +0.3 -0.4 N.D. N.D.
plant Upstate -0.5 +0.8 -0.6 N.D. N.D.
carbon source M9+glycerol -0.0 -0.6 +0.4 N.D. N.D.
plant Atlantic -0.3 +0.5 -0.4 N.D. N.D.
carbon source M9+glycerol -0.1 -0.5 +0.4 N.D. N.D.
plant Atlantic -0.3 +0.4 -0.2 N.D. N.D.
carbon source M9+sucrose -0.3 +0.4 -0.2 N.D. N.D.
control PDB +1.1 -0.8 -0.3 N.D. N.D.
control PDB +1.1 -0.5 -0.3 N.D. N.D.
control LB -0.3 +0.6 -0.0 N.D. N.D.
carbon source M9+polygalacturonate +0.4 +0.4 -0.1 N.D. N.D.
carbon source M9+polygalacturonate +1.1 -0.5 +0.0 N.D. N.D.
control PDB +1.2 +0.1 -0.5 N.D. N.D.
control PDB +1.4 -0.2 -0.2 N.D. N.D.
control PDB +1.3 -0.0 -0.3 N.D. N.D.
control PDB +1.3 +0.4 -0.2 N.D. N.D.
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