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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS18140 and HGI48_RS18145 are separated by 2 nucleotides
HGI48_RS18145 and HGI48_RS18150 overlap by 4 nucleotides
HGI48_RS18150 and HGI48_RS18155 overlap by 4 nucleotides
HGI48_RS18155 and HGI48_RS18160 are separated by 66 nucleotides
HGI48_RS18140: HGI48_RS18140 - hypothetical protein, at 4,069,533 to 4,070,099
_RS18140
HGI48_RS18145: HGI48_RS18145 - hypothetical protein, at 4,070,102 to 4,070,665
_RS18145
HGI48_RS18150: HGI48_RS18150 - hypothetical protein, at 4,070,662 to 4,071,228
_RS18150
HGI48_RS18155: HGI48_RS18155 - hypothetical protein, at 4,071,225 to 4,071,791
_RS18155
HGI48_RS18160: HGI48_RS18160 - Hcp family type VI secretion system effector, at 4,071,858 to 4,072,337
_RS18160
Group
Condition
HGI48
_RS18140
HGI48
_RS18145
HGI48
_RS18150
HGI48
_RS18155
HGI48
_RS18160
carbon source
M9+sucrose
N.D.
-3.4
-0.5
-0.5
N.D.
plant
Norland
N.D.
-2.0
+0.1
+0.1
N.D.
carbon source
M9+glycerol
N.D.
-0.5
-0.4
-0.6
N.D.
control
PDB
N.D.
-0.4
-0.4
-0.2
N.D.
control
PDB
N.D.
-1.3
+0.5
-0.1
N.D.
control
LB
N.D.
-0.6
+0.1
-0.2
N.D.
carbon source
M9+glycerol
N.D.
-0.9
+0.1
-0.0
N.D.
carbon source
M9+sucrose
N.D.
-0.2
-0.7
+0.1
N.D.
carbon source
M9+polygalacturonate
N.D.
-0.4
-0.4
+0.2
N.D.
carbon source
M9+glycerol
N.D.
-0.3
+0.1
-0.4
N.D.
plant
Atlantic
N.D.
-0.3
-0.3
+0.0
N.D.
control
PDB
N.D.
+0.3
-0.5
-0.3
N.D.
control
PDB
N.D.
-0.1
+0.3
-0.7
N.D.
carbon source
M9+polygalacturonate
N.D.
+0.5
-0.4
-0.3
N.D.
plant
Atlantic
N.D.
-0.7
+0.4
+0.2
N.D.
plant
Atlantic
N.D.
-0.0
-0.7
+0.7
N.D.
control
LB
N.D.
-0.3
+0.3
+0.1
N.D.
control
PDB
N.D.
+0.5
-0.3
-0.1
N.D.
plant
Atlantic
N.D.
+0.7
-0.3
+0.1
N.D.
control
LB
N.D.
+0.3
+0.1
+0.2
N.D.
plant
Norland
N.D.
-0.2
+0.8
+0.0
N.D.
plant
Upstate
N.D.
+0.2
+0.2
+0.3
N.D.
carbon source
M9+sucrose
N.D.
+0.9
-0.3
+0.2
N.D.
plant
Upstate
N.D.
+0.2
+0.4
+0.2
N.D.
plant
Norland
N.D.
+0.4
+0.3
+0.1
N.D.
carbon source
M9+glycerol
N.D.
+0.2
+0.2
+0.5
N.D.
plant
Norland
N.D.
+0.6
+0.0
+0.4
N.D.
plant
Norland
N.D.
+0.3
+0.2
+0.6
N.D.
plant
Atlantic
N.D.
+0.1
+0.5
+0.6
N.D.
plant
Norland
N.D.
+1.0
+0.3
+0.2
N.D.
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