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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS17925 and HGI48_RS17930 are separated by 104 nucleotides
HGI48_RS17930 and HGI48_RS17935 are separated by 69 nucleotides
HGI48_RS17935 and HGI48_RS17940 are separated by 97 nucleotides
HGI48_RS17940 and HGI48_RS17945 are separated by 27 nucleotides
HGI48_RS17925: HGI48_RS17925 - DNA gyrase inhibitor YacG, at 4,022,525 to 4,022,722
_RS17925
HGI48_RS17930: HGI48_RS17930 - 8-oxo-dGTP diphosphatase MutT, at 4,022,827 to 4,023,228
_RS17930
HGI48_RS17935: HGI48_RS17935 - preprotein translocase subunit SecA, at 4,023,298 to 4,025,991
_RS17935
HGI48_RS17940: HGI48_RS17940 - secA regulator SecM, at 4,026,089 to 4,026,589
_RS17940
HGI48_RS17945: HGI48_RS17945 - DUF721 domain-containing protein, at 4,026,617 to 4,027,138
_RS17945
Group
Condition
HGI48
_RS17925
HGI48
_RS17930
HGI48
_RS17935
HGI48
_RS17940
HGI48
_RS17945
carbon source
M9+glycerol
-2.8
+0.1
N.D.
-0.3
N.D.
plant
Norland
-1.1
-1.1
N.D.
-0.5
N.D.
plant
Atlantic
+0.2
-1.2
N.D.
-1.0
N.D.
plant
Upstate
-0.3
-1.2
N.D.
-0.3
N.D.
carbon source
M9+glycerol
-1.5
+0.5
N.D.
-0.4
N.D.
carbon source
M9+sucrose
-0.5
+0.3
N.D.
-1.0
N.D.
plant
Upstate
-0.6
-0.7
N.D.
+0.1
N.D.
plant
Atlantic
-0.2
-0.5
N.D.
-0.3
N.D.
carbon source
M9+polygalacturonate
+0.2
-1.1
N.D.
-0.1
N.D.
plant
Norland
-0.3
-0.3
N.D.
-0.4
N.D.
carbon source
M9+glycerol
-0.0
-0.5
N.D.
-0.4
N.D.
control
PDB
-0.2
+0.1
N.D.
-0.6
N.D.
control
PDB
-0.4
-0.2
N.D.
-0.1
N.D.
carbon source
M9+glycerol
-0.4
-0.3
N.D.
+0.0
N.D.
carbon source
M9+sucrose
-0.1
-0.2
N.D.
-0.4
N.D.
plant
Norland
-0.6
+0.1
N.D.
-0.1
N.D.
plant
Atlantic
-0.2
-0.3
N.D.
-0.1
N.D.
plant
Atlantic
-0.3
+0.1
N.D.
-0.2
N.D.
control
LB
-0.6
+0.1
N.D.
-0.0
N.D.
carbon source
M9+polygalacturonate
+0.5
-0.1
N.D.
-0.7
N.D.
carbon source
M9+glycerol
-0.5
-0.1
N.D.
+0.2
N.D.
carbon source
M9+sucrose
-0.0
+0.4
N.D.
-0.6
N.D.
plant
Atlantic
-0.5
+0.2
N.D.
+0.2
N.D.
plant
Upstate
+0.7
-0.6
N.D.
-0.2
N.D.
carbon source
M9+polygalacturonate
-0.2
+0.7
N.D.
-0.2
N.D.
control
PDB
+0.4
+0.3
N.D.
-0.1
N.D.
plant
Upstate
+0.4
+0.5
N.D.
-0.2
N.D.
plant
Norland
+0.7
+0.2
N.D.
-0.2
N.D.
plant
Atlantic
+0.6
+0.3
N.D.
-0.2
N.D.
plant
Norland
+0.6
+0.3
N.D.
-0.1
N.D.
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