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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS17900 and HGI48_RS17905 are separated by 9 nucleotides
HGI48_RS17905 and HGI48_RS17910 are separated by 105 nucleotides
HGI48_RS17910 and HGI48_RS17915 are separated by 167 nucleotides
HGI48_RS17915 and HGI48_RS17920 overlap by 8 nucleotides
HGI48_RS17900: HGI48_RS17900 - type II secretion system protein GspE, at 4,017,121 to 4,018,596
_RS17900
HGI48_RS17905: HGI48_RS17905 - protein transport protein HofC, at 4,018,606 to 4,019,811
_RS17905
HGI48_RS17910: HGI48_RS17910 - GMP reductase, at 4,019,917 to 4,020,957
_RS17910
HGI48_RS17915: HGI48_RS17915 - dephospho-CoA kinase, at 4,021,125 to 4,021,751
_RS17915
HGI48_RS17920: HGI48_RS17920 - cell division protein ZapD, at 4,021,744 to 4,022,493
_RS17920
Group
Condition
HGI48
_RS17900
HGI48
_RS17905
HGI48
_RS17910
HGI48
_RS17915
HGI48
_RS17920
carbon source
M9+glycerol
-0.3
-0.2
-0.5
N.D.
-0.4
carbon source
M9+sucrose
-0.2
-0.2
-0.3
N.D.
-0.5
carbon source
M9+glycerol
-0.3
+0.0
-0.2
N.D.
-0.5
carbon source
M9+glycerol
-0.3
-0.2
-0.1
N.D.
-0.2
carbon source
M9+glycerol
-0.2
-0.0
+0.1
N.D.
-0.6
plant
Norland
+0.2
-0.1
-0.5
N.D.
-0.2
carbon source
M9+glycerol
-0.1
-0.3
+0.1
N.D.
-0.2
carbon source
M9+sucrose
+0.1
-0.2
-0.2
N.D.
-0.2
plant
Norland
-0.2
-0.1
-0.1
N.D.
-0.0
plant
Atlantic
+0.2
-0.2
-0.3
N.D.
-0.1
carbon source
M9+glycerol
-0.0
+0.0
+0.1
N.D.
-0.4
control
PDB
-0.2
+0.1
-0.2
N.D.
+0.1
plant
Atlantic
-0.2
-0.2
+0.1
N.D.
+0.2
plant
Norland
-0.0
-0.3
+0.1
N.D.
+0.0
control
PDB
-0.2
-0.1
-0.1
N.D.
+0.2
carbon source
M9+sucrose
-0.1
+0.2
+0.1
N.D.
-0.3
control
PDB
-0.0
-0.1
+0.1
N.D.
-0.1
plant
Norland
+0.1
-0.3
+0.0
N.D.
+0.1
carbon source
M9+polygalacturonate
+0.1
-0.1
+0.1
N.D.
-0.1
plant
Upstate
-0.1
+0.2
+0.1
N.D.
-0.2
plant
Norland
-0.1
+0.1
+0.0
N.D.
+0.1
plant
Upstate
-0.1
+0.2
-0.1
N.D.
+0.0
plant
Upstate
-0.2
+0.2
-0.0
N.D.
+0.2
plant
Upstate
-0.0
+0.3
-0.1
N.D.
+0.0
control
LB
-0.0
-0.1
+0.2
N.D.
+0.2
carbon source
M9+polygalacturonate
+0.3
-0.0
+0.1
N.D.
+0.1
control
PDB
+0.2
+0.1
+0.2
N.D.
+0.0
plant
Atlantic
+0.1
-0.2
+0.4
N.D.
+0.2
plant
Atlantic
+0.2
+0.3
+0.1
N.D.
-0.0
plant
Atlantic
-0.2
+0.2
+0.3
N.D.
+0.2
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