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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS17890 and HGI48_RS17895 are separated by 261 nucleotides
HGI48_RS17895 and HGI48_RS17900 are separated by 5 nucleotides
HGI48_RS17900 and HGI48_RS17905 are separated by 9 nucleotides
HGI48_RS17905 and HGI48_RS17910 are separated by 105 nucleotides
HGI48_RS17890: HGI48_RS17890 - carboxylating nicotinate-nucleotide diphosphorylase, at 4,015,520 to 4,016,410
_RS17890
HGI48_RS17895: HGI48_RS17895 - prepilin peptidase-dependent pilin, at 4,016,672 to 4,017,115
_RS17895
HGI48_RS17900: HGI48_RS17900 - type II secretion system protein GspE, at 4,017,121 to 4,018,596
_RS17900
HGI48_RS17905: HGI48_RS17905 - protein transport protein HofC, at 4,018,606 to 4,019,811
_RS17905
HGI48_RS17910: HGI48_RS17910 - GMP reductase, at 4,019,917 to 4,020,957
_RS17910
Group
Condition
HGI48
_RS17890
HGI48
_RS17895
HGI48
_RS17900
HGI48
_RS17905
HGI48
_RS17910
carbon source
M9+sucrose
-2.2
-0.0
-0.2
-0.2
-0.3
carbon source
M9+glycerol
-2.4
+0.1
-0.2
-0.0
+0.1
carbon source
M9+polygalacturonate
-2.8
+0.2
+0.3
-0.0
+0.1
carbon source
M9+sucrose
-1.5
-0.1
+0.1
-0.2
-0.2
carbon source
M9+glycerol
-1.1
-0.2
-0.0
+0.0
+0.1
carbon source
M9+sucrose
-1.2
+0.0
-0.1
+0.2
+0.1
carbon source
M9+glycerol
-0.6
-0.1
-0.3
+0.0
-0.2
plant
Atlantic
-1.3
+0.5
+0.2
-0.2
-0.3
carbon source
M9+glycerol
-0.7
+0.1
-0.1
-0.3
+0.1
carbon source
M9+glycerol
+0.2
-0.1
-0.3
-0.2
-0.5
plant
Atlantic
-1.4
+0.2
+0.1
-0.2
+0.4
plant
Atlantic
-1.6
+0.4
-0.2
+0.2
+0.3
carbon source
M9+polygalacturonate
-1.4
+0.6
+0.1
-0.1
+0.1
control
PDB
-0.2
-0.1
-0.2
-0.1
-0.1
plant
Norland
-0.4
+0.2
+0.2
-0.1
-0.5
control
LB
-0.5
-0.2
+0.1
+0.1
-0.0
carbon source
M9+glycerol
-0.2
+0.2
-0.3
-0.2
-0.1
plant
Upstate
-0.5
+0.0
-0.2
+0.2
-0.0
plant
Atlantic
-0.5
+0.2
+0.0
-0.0
-0.1
control
LB
-0.8
+0.4
-0.0
-0.1
+0.2
plant
Norland
-0.5
+0.2
-0.1
+0.1
-0.0
plant
Norland
-0.4
+0.3
-0.0
-0.3
+0.1
plant
Upstate
-0.3
+0.1
-0.1
+0.2
-0.1
plant
Upstate
-0.3
+0.1
-0.0
+0.3
-0.1
plant
Norland
-0.1
+0.3
+0.1
-0.3
+0.0
control
PDB
-0.2
+0.2
+0.2
-0.0
-0.0
control
PDB
-0.0
+0.5
-0.2
+0.1
-0.2
plant
Atlantic
+0.5
+0.5
-0.2
-0.2
+0.1
plant
Upstate
+0.0
+0.4
-0.1
+0.2
+0.1
plant
Atlantic
+0.1
+0.5
+0.2
+0.3
+0.1
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