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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS17780 and HGI48_RS17785 are separated by 214 nucleotides
HGI48_RS17785 and HGI48_RS17790 are separated by 97 nucleotides
HGI48_RS17790 and HGI48_RS17795 are separated by 37 nucleotides
HGI48_RS17795 and HGI48_RS17800 are separated by 6 nucleotides
HGI48_RS17780: HGI48_RS17780 - four-carbon acid sugar kinase family protein, at 3,987,301 to 3,988,587
_RS17780
HGI48_RS17785: HGI48_RS17785 - iron-containing alcohol dehydrogenase, at 3,988,802 to 3,989,938
_RS17785
HGI48_RS17790: HGI48_RS17790 - dihydrodipicolinate synthase family protein, at 3,990,036 to 3,990,920
_RS17790
HGI48_RS17795: HGI48_RS17795 - sodium:solute symporter family protein, at 3,990,958 to 3,992,379
_RS17795
HGI48_RS17800: HGI48_RS17800 - exo-alpha-sialidase, at 3,992,386 to 3,993,561
_RS17800
Group
Condition
HGI48
_RS17780
HGI48
_RS17785
HGI48
_RS17790
HGI48
_RS17795
HGI48
_RS17800
control
PDB
-0.2
+0.1
-0.5
-0.0
-0.1
plant
Upstate
+0.1
-0.1
-0.1
-0.2
-0.4
carbon source
M9+glycerol
-0.3
-0.1
-0.3
+0.1
-0.1
plant
Norland
-0.2
-0.1
-0.2
-0.0
-0.2
plant
Norland
-0.1
+0.2
-0.5
-0.2
-0.0
carbon source
M9+glycerol
-0.3
-0.3
-0.0
-0.2
+0.3
plant
Norland
+0.3
-0.2
+0.0
-0.1
-0.6
control
LB
-0.1
-0.1
-0.4
+0.1
-0.0
plant
Atlantic
+0.0
-0.2
-0.0
+0.1
-0.3
plant
Atlantic
+0.4
+0.0
-0.2
-0.3
-0.3
carbon source
M9+glycerol
+0.2
+0.0
-0.9
+0.1
+0.3
plant
Atlantic
-0.1
+0.2
-0.3
+0.1
-0.1
plant
Upstate
+0.2
+0.1
-0.1
+0.2
-0.6
plant
Atlantic
+0.2
-0.2
-0.1
-0.0
+0.0
plant
Atlantic
-0.3
+0.5
-0.0
-0.3
-0.0
plant
Upstate
-0.2
-0.3
+0.3
+0.3
-0.3
plant
Norland
-0.1
-0.2
-0.0
+0.2
+0.1
plant
Atlantic
-0.1
+0.0
-0.1
+0.6
-0.2
carbon source
M9+polygalacturonate
-0.3
-0.3
+0.3
-0.1
+0.6
control
PDB
+0.2
+0.4
-0.0
-0.1
-0.1
carbon source
M9+sucrose
+0.3
+0.1
-0.2
-0.1
+0.3
carbon source
M9+glycerol
+0.1
+0.2
-0.3
+0.1
+0.4
control
PDB
+0.1
+0.2
+0.1
+0.1
+0.1
plant
Upstate
+0.1
-0.0
+0.9
+0.0
-0.4
carbon source
M9+glycerol
-0.1
+0.2
+0.2
+0.1
+0.4
carbon source
M9+polygalacturonate
-0.1
-0.1
+0.6
+0.2
+0.2
control
PDB
-0.0
+0.4
-0.1
+0.1
+0.4
carbon source
M9+polygalacturonate
-0.3
+0.3
-0.1
-0.0
+0.9
carbon source
M9+sucrose
+0.5
+0.3
+0.1
-0.1
+0.1
control
PDB
+0.1
+0.2
+0.5
-0.1
+0.3
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