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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS17765 and HGI48_RS17770 are separated by 137 nucleotides
HGI48_RS17770 and HGI48_RS17775 are separated by 24 nucleotides
HGI48_RS17775 and HGI48_RS17780 overlap by 8 nucleotides
HGI48_RS17780 and HGI48_RS17785 are separated by 214 nucleotides
HGI48_RS17765: HGI48_RS17765 - TIGR00730 family Rossman fold protein, at 3,984,769 to 3,985,335
_RS17765
HGI48_RS17770: HGI48_RS17770 - DeoR/GlpR transcriptional regulator, at 3,985,473 to 3,986,303
_RS17770
HGI48_RS17775: HGI48_RS17775 - D-threonate 4-phosphate dehydrogenase, at 3,986,328 to 3,987,308
_RS17775
HGI48_RS17780: HGI48_RS17780 - four-carbon acid sugar kinase family protein, at 3,987,301 to 3,988,587
_RS17780
HGI48_RS17785: HGI48_RS17785 - iron-containing alcohol dehydrogenase, at 3,988,802 to 3,989,938
_RS17785
Group
Condition
HGI48
_RS17765
HGI48
_RS17770
HGI48
_RS17775
HGI48
_RS17780
HGI48
_RS17785
carbon source
M9+polygalacturonate
-0.1
-2.9
-2.0
-0.1
-0.1
plant
Norland
-0.0
-3.3
-1.5
-0.1
+0.0
plant
Atlantic
+0.1
-3.0
-1.4
-0.3
+0.5
plant
Norland
-0.2
-1.7
-1.7
-0.1
-0.2
plant
Norland
+0.1
-1.9
-1.8
+0.3
-0.2
plant
Atlantic
-0.2
-2.2
-1.1
-0.1
+0.2
plant
Upstate
-0.6
-1.1
-1.4
-0.2
-0.1
carbon source
M9+glycerol
-1.0
-1.6
-0.4
-0.3
-0.1
plant
Upstate
+0.1
-2.2
-1.2
+0.2
+0.1
carbon source
M9+glycerol
-0.1
-1.9
-0.4
-0.3
-0.3
control
LB
+0.1
-1.6
-1.6
-0.0
+0.1
plant
Atlantic
+0.3
-1.5
-1.5
+0.2
-0.2
carbon source
M9+polygalacturonate
-0.4
-1.1
-1.1
-0.3
+0.3
plant
Norland
-0.3
-0.5
-1.5
-0.2
-0.1
control
LB
-0.1
-1.1
-1.1
-0.1
-0.1
plant
Upstate
-0.1
-1.1
-1.3
+0.1
-0.0
plant
Norland
-0.1
-0.4
-1.7
-0.1
+0.2
plant
Upstate
-0.0
-0.4
-1.6
+0.1
-0.1
carbon source
M9+glycerol
-0.4
-1.7
-0.2
+0.1
+0.2
control
LB
+0.2
-0.7
-1.7
+0.1
+0.1
carbon source
M9+glycerol
-0.4
-1.9
+0.2
+0.2
+0.0
plant
Upstate
-0.1
-0.6
-0.8
-0.2
-0.3
carbon source
M9+glycerol
+0.1
-1.3
-0.7
-0.1
+0.2
carbon source
M9+polygalacturonate
+0.0
+0.5
-1.7
-0.3
-0.3
control
LB
-0.3
+0.2
-1.4
+0.1
-0.1
plant
Atlantic
-0.1
-0.2
-1.6
+0.4
+0.0
control
PDB
-0.2
-0.8
-0.6
+0.1
+0.2
carbon source
M9+sucrose
-0.2
+0.4
-1.2
+0.1
+0.1
control
PDB
+0.2
+0.6
-0.8
-0.0
+0.4
carbon source
M9+sucrose
+0.2
+1.0
-0.7
+0.5
+0.3
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