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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS17750 and HGI48_RS17755 overlap by 4 nucleotides
HGI48_RS17755 and HGI48_RS17760 are separated by 42 nucleotides
HGI48_RS17760 and HGI48_RS17765 are separated by 210 nucleotides
HGI48_RS17765 and HGI48_RS17770 are separated by 137 nucleotides
HGI48_RS17750: HGI48_RS17750 - ABC transporter ATP-binding protein, at 3,982,049 to 3,982,786
_RS17750
HGI48_RS17755: HGI48_RS17755 - metal ABC transporter permease, at 3,982,783 to 3,983,637
_RS17755
HGI48_RS17760: HGI48_RS17760 - metal ABC transporter substrate-binding protein, at 3,983,680 to 3,984,558
_RS17760
HGI48_RS17765: HGI48_RS17765 - TIGR00730 family Rossman fold protein, at 3,984,769 to 3,985,335
_RS17765
HGI48_RS17770: HGI48_RS17770 - DeoR/GlpR transcriptional regulator, at 3,985,473 to 3,986,303
_RS17770
Group
Condition
HGI48
_RS17750
HGI48
_RS17755
HGI48
_RS17760
HGI48
_RS17765
HGI48
_RS17770
plant
Atlantic
-0.8
+0.0
-0.0
+0.1
-3.0
plant
Norland
-0.3
+0.3
+0.1
-0.0
-3.3
plant
Norland
-1.2
+0.3
+0.2
+0.1
-1.9
plant
Upstate
-0.6
-0.0
+0.2
+0.1
-2.2
carbon source
M9+glycerol
-1.0
-0.0
-0.1
-0.7
-0.7
plant
Atlantic
-0.4
+0.2
+0.3
-0.2
-2.2
carbon source
M9+glycerol
-0.8
-0.6
+0.2
+0.1
-1.3
carbon source
M9+glycerol
-0.4
-0.0
+0.2
-0.4
-1.7
carbon source
M9+glycerol
-0.1
+0.2
+0.1
-0.4
-1.9
carbon source
M9+glycerol
+0.1
+0.0
+0.2
-1.0
-1.6
plant
Norland
-0.7
+0.3
+0.0
-0.2
-1.7
carbon source
M9+polygalacturonate
+0.2
+0.6
+0.1
-0.1
-2.9
plant
Upstate
-0.0
+0.0
-0.0
-0.6
-1.1
carbon source
M9+glycerol
+0.2
-0.2
+0.3
-0.1
-1.9
control
LB
-0.6
+0.0
+0.1
-0.1
-1.1
control
LB
-0.1
-0.0
-0.0
+0.1
-1.6
plant
Atlantic
-1.4
+0.1
+0.6
-0.0
-0.9
plant
Upstate
-0.3
-0.0
+0.1
-0.1
-1.1
plant
Atlantic
-0.7
+0.5
+0.1
+0.3
-1.5
plant
Norland
-0.1
-0.1
+0.2
+0.2
-1.3
plant
Upstate
-0.4
+0.5
-0.2
-0.0
-0.4
carbon source
M9+polygalacturonate
+0.2
+0.6
+0.2
-0.4
-1.1
control
PDB
+0.1
+0.3
+0.2
-0.2
-0.8
plant
Atlantic
-1.0
+0.6
+0.1
+0.0
-0.0
control
PDB
+0.0
+0.3
+0.2
-0.0
-0.7
control
PDB
-0.3
+0.4
-0.1
+0.2
+0.6
carbon source
M9+polygalacturonate
-0.1
+0.7
+0.2
+0.0
+0.5
carbon source
M9+sucrose
+0.7
+0.7
+0.6
-0.2
+0.4
carbon source
M9+sucrose
+0.5
+0.4
+0.4
+0.2
+1.0
carbon source
M9+sucrose
+0.8
+1.1
+0.6
+0.3
+0.4
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