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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS17695 and HGI48_RS17700 are separated by 124 nucleotides
HGI48_RS17700 and HGI48_RS17705 are separated by 44 nucleotides
HGI48_RS17705 and HGI48_RS17710 are separated by 0 nucleotides
HGI48_RS17710 and HGI48_RS17715 are separated by 15 nucleotides
HGI48_RS17695: HGI48_RS17695 - hypothetical protein, at 3,963,782 to 3,967,612
_RS17695
HGI48_RS17700: HGI48_RS17700 - hypothetical protein, at 3,967,737 to 3,970,181
_RS17700
HGI48_RS17705: HGI48_RS17705 - LacI family DNA-binding transcriptional regulator, at 3,970,226 to 3,971,284
_RS17705
HGI48_RS17710: HGI48_RS17710 - carbohydrate ABC transporter permease, at 3,971,285 to 3,972,334
_RS17710
HGI48_RS17715: HGI48_RS17715 - sugar ABC transporter permease, at 3,972,350 to 3,973,351
_RS17715
Group
Condition
HGI48
_RS17695
HGI48
_RS17700
HGI48
_RS17705
HGI48
_RS17710
HGI48
_RS17715
carbon source
M9+glycerol
-0.2
-0.0
-1.3
+0.0
+0.1
control
LB
-0.1
+0.2
-0.5
-0.2
-0.0
carbon source
M9+glycerol
-0.3
-0.2
-0.2
+0.1
+0.0
control
PDB
-0.0
+0.2
-0.6
+0.0
+0.0
plant
Upstate
-0.2
+0.0
+0.3
-0.2
-0.2
plant
Atlantic
-0.4
+0.2
+0.1
-0.1
+0.2
carbon source
M9+glycerol
-0.2
-0.0
+0.8
-0.4
-0.1
plant
Atlantic
-0.6
-0.3
+0.8
+0.2
+0.1
plant
Atlantic
-0.3
-0.1
-0.0
+0.4
+0.2
plant
Upstate
-0.2
+0.0
+0.7
-0.4
+0.2
control
LB
-0.1
+0.2
+0.5
-0.3
+0.2
control
PDB
+0.1
+0.1
-0.2
+0.3
+0.1
carbon source
M9+polygalacturonate
+0.2
+0.0
-0.0
-0.2
+0.5
plant
Upstate
-0.1
-0.0
+0.5
-0.1
+0.2
control
LB
-0.2
-0.1
+0.6
+0.2
+0.1
control
PDB
-0.1
+0.0
+0.9
-0.3
+0.1
control
PDB
-0.0
+0.1
+0.4
+0.2
+0.0
carbon source
M9+sucrose
+0.3
-0.2
+0.2
+0.3
+0.1
plant
Atlantic
+0.2
+0.2
+0.1
+0.2
+0.1
plant
Norland
+0.0
+0.1
+0.4
+0.2
+0.1
plant
Norland
-0.1
+0.0
+0.7
-0.0
+0.3
plant
Norland
-0.1
+0.3
+0.2
+0.2
+0.4
carbon source
M9+glycerol
-0.1
+0.1
+0.8
+0.3
-0.0
control
PDB
-0.1
+0.2
+0.2
+0.3
+0.4
control
PDB
-0.0
+0.1
+0.9
+0.0
+0.2
plant
Atlantic
-0.0
+0.1
+0.5
+0.3
+0.3
carbon source
M9+polygalacturonate
-0.2
-0.2
+1.5
+0.2
+0.1
plant
Upstate
-0.0
+0.1
+1.0
+0.2
+0.2
carbon source
M9+polygalacturonate
-0.1
-0.0
+0.8
+0.4
+0.3
plant
Atlantic
-0.4
-0.1
+2.1
+0.1
+0.0
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