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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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500 nt
HGI48_RS17670 and HGI48_RS17675 are separated by 2 nucleotides
HGI48_RS17675 and HGI48_RS17680 are separated by 69 nucleotides
HGI48_RS17680 and HGI48_RS17685 are separated by 81 nucleotides
HGI48_RS17685 and HGI48_RS17690 are separated by 2 nucleotides
HGI48_RS17670: HGI48_RS17670 - PAAR domain-containing protein, at 3,955,448 to 3,955,747
_RS17670
HGI48_RS17675: HGI48_RS17675 - GPW/gp25 family protein, at 3,955,750 to 3,956,169
_RS17675
HGI48_RS17680: HGI48_RS17680 - baseplate J/gp47 family protein, at 3,956,239 to 3,960,330
_RS17680
HGI48_RS17685: HGI48_RS17685 - hypothetical protein, at 3,960,412 to 3,961,239
_RS17685
HGI48_RS17690: HGI48_RS17690 - hypothetical protein, at 3,961,242 to 3,963,785
_RS17690
Group
Condition
HGI48
_RS17670
HGI48
_RS17675
HGI48
_RS17680
HGI48
_RS17685
HGI48
_RS17690
carbon source
M9+glycerol
N.D.
N.D.
-0.1
-0.7
-0.1
plant
Atlantic
N.D.
N.D.
+0.0
-0.6
-0.0
plant
Norland
N.D.
N.D.
+0.1
-0.3
-0.2
plant
Atlantic
N.D.
N.D.
+0.0
-0.6
+0.5
plant
Upstate
N.D.
N.D.
+0.0
+0.2
-0.2
control
PDB
N.D.
N.D.
+0.1
+0.3
-0.2
plant
Upstate
N.D.
N.D.
+0.1
+0.3
-0.1
carbon source
M9+glycerol
N.D.
N.D.
+0.0
+0.7
-0.5
plant
Atlantic
N.D.
N.D.
-0.3
+0.5
+0.0
control
PDB
N.D.
N.D.
+0.1
-0.0
+0.2
plant
Norland
N.D.
N.D.
+0.2
-0.1
+0.2
control
LB
N.D.
N.D.
+0.1
+0.3
-0.0
carbon source
M9+polygalacturonate
N.D.
N.D.
-0.0
+0.2
+0.2
carbon source
M9+glycerol
N.D.
N.D.
+0.0
+0.6
-0.2
plant
Atlantic
N.D.
N.D.
+0.2
+0.4
-0.1
carbon source
M9+sucrose
N.D.
N.D.
+0.2
+0.4
-0.0
control
PDB
N.D.
N.D.
+0.1
+0.6
-0.1
control
PDB
N.D.
N.D.
+0.1
+0.5
+0.0
plant
Upstate
N.D.
N.D.
-0.0
+0.7
-0.0
carbon source
M9+glycerol
N.D.
N.D.
-0.0
+0.4
+0.2
carbon source
M9+polygalacturonate
N.D.
N.D.
+0.1
+0.4
+0.1
plant
Norland
N.D.
N.D.
+0.0
-0.0
+0.7
plant
Upstate
N.D.
N.D.
+0.2
+0.4
+0.1
carbon source
M9+glycerol
N.D.
N.D.
+0.2
+0.5
+0.2
plant
Norland
N.D.
N.D.
+0.1
+0.7
+0.0
plant
Norland
N.D.
N.D.
-0.0
+0.6
+0.3
carbon source
M9+polygalacturonate
N.D.
N.D.
+0.1
+0.7
+0.2
plant
Atlantic
N.D.
N.D.
-0.0
+1.1
-0.1
plant
Atlantic
N.D.
N.D.
+0.1
+0.9
+0.1
carbon source
M9+sucrose
N.D.
N.D.
+0.3
+1.1
+0.4
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HGI48_RS17680
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