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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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500 nt
HGI48_RS17665 and HGI48_RS17670 are separated by 385 nucleotides
HGI48_RS17670 and HGI48_RS17675 are separated by 2 nucleotides
HGI48_RS17675 and HGI48_RS17680 are separated by 69 nucleotides
HGI48_RS17680 and HGI48_RS17685 are separated by 81 nucleotides
HGI48_RS17665: HGI48_RS17665 - type VI secretion system tip protein VgrG, at 3,953,272 to 3,955,062
_RS17665
HGI48_RS17670: HGI48_RS17670 - PAAR domain-containing protein, at 3,955,448 to 3,955,747
_RS17670
HGI48_RS17675: HGI48_RS17675 - GPW/gp25 family protein, at 3,955,750 to 3,956,169
_RS17675
HGI48_RS17680: HGI48_RS17680 - baseplate J/gp47 family protein, at 3,956,239 to 3,960,330
_RS17680
HGI48_RS17685: HGI48_RS17685 - hypothetical protein, at 3,960,412 to 3,961,239
_RS17685
Group
Condition
HGI48
_RS17665
HGI48
_RS17670
HGI48
_RS17675
HGI48
_RS17680
HGI48
_RS17685
plant
Atlantic
-0.1
N.D.
N.D.
+0.0
-0.6
carbon source
M9+glycerol
+0.2
N.D.
N.D.
-0.1
-0.7
plant
Atlantic
-0.0
N.D.
N.D.
+0.0
-0.6
control
LB
-0.1
N.D.
N.D.
+0.1
-0.1
plant
Norland
+0.2
N.D.
N.D.
+0.1
-0.3
plant
Atlantic
-0.1
N.D.
N.D.
-0.3
+0.5
control
PDB
+0.3
N.D.
N.D.
+0.1
-0.2
control
PDB
-0.2
N.D.
N.D.
+0.1
+0.3
plant
Atlantic
-0.3
N.D.
N.D.
+0.2
+0.4
plant
Upstate
-0.0
N.D.
N.D.
+0.1
+0.3
plant
Norland
+0.2
N.D.
N.D.
+0.2
-0.1
carbon source
M9+sucrose
+0.2
N.D.
N.D.
+0.1
+0.0
carbon source
M9+glycerol
-0.2
N.D.
N.D.
+0.0
+0.6
control
LB
+0.1
N.D.
N.D.
+0.1
+0.3
carbon source
M9+glycerol
+0.1
N.D.
N.D.
-0.0
+0.4
plant
Norland
-0.1
N.D.
N.D.
-0.0
+0.6
plant
Upstate
+0.2
N.D.
N.D.
+0.0
+0.2
carbon source
M9+glycerol
-0.0
N.D.
N.D.
+0.2
+0.5
carbon source
M9+sucrose
+0.0
N.D.
N.D.
+0.2
+0.4
plant
Upstate
+0.0
N.D.
N.D.
+0.2
+0.4
control
PDB
+0.0
N.D.
N.D.
+0.1
+0.5
plant
Upstate
+0.0
N.D.
N.D.
-0.0
+0.7
carbon source
M9+polygalacturonate
+0.2
N.D.
N.D.
+0.1
+0.4
carbon source
M9+polygalacturonate
+0.0
N.D.
N.D.
+0.1
+0.7
control
PDB
+0.1
N.D.
N.D.
+0.1
+0.6
carbon source
M9+glycerol
+0.2
N.D.
N.D.
+0.0
+0.7
plant
Norland
+0.1
N.D.
N.D.
+0.1
+0.7
plant
Atlantic
+0.2
N.D.
N.D.
+0.1
+0.9
carbon source
M9+sucrose
-0.1
N.D.
N.D.
+0.3
+1.1
plant
Atlantic
+0.2
N.D.
N.D.
-0.0
+1.1
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