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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS17535 and HGI48_RS17540 are separated by 181 nucleotides
HGI48_RS17540 and HGI48_RS17545 are separated by 191 nucleotides
HGI48_RS17545 and HGI48_RS17550 are separated by 410 nucleotides
HGI48_RS17550 and HGI48_RS17555 are separated by 428 nucleotides
HGI48_RS17535: HGI48_RS17535 - DUF2384 domain-containing protein, at 3,924,328 to 3,924,780
_RS17535
HGI48_RS17540: HGI48_RS17540 - tRNA dihydrouridine(20/20a) synthase DusA, at 3,924,962 to 3,925,942
_RS17540
HGI48_RS17545: HGI48_RS17545 - envelope stress response protein PspG, at 3,926,134 to 3,926,409
_RS17545
HGI48_RS17550: HGI48_RS17550 - cytochrome P450, at 3,926,820 to 3,928,226
_RS17550
HGI48_RS17555: HGI48_RS17555 - quinone oxidoreductase, at 3,928,655 to 3,929,656
_RS17555
Group
Condition
HGI48
_RS17535
HGI48
_RS17540
HGI48
_RS17545
HGI48
_RS17550
HGI48
_RS17555
carbon source
M9+glycerol
-0.1
-0.2
-0.7
+0.1
-0.0
control
LB
-0.6
-0.2
-0.1
+0.1
+0.0
carbon source
M9+glycerol
+0.2
-0.4
-0.8
+0.3
-0.1
carbon source
M9+glycerol
-0.5
-0.0
-0.2
+0.0
-0.1
plant
Norland
-0.6
-0.3
+0.1
+0.2
-0.1
plant
Upstate
-0.3
-0.1
-0.3
+0.3
-0.1
plant
Norland
-0.4
-0.3
-0.2
+0.3
+0.1
plant
Upstate
-0.6
-0.0
+0.0
+0.1
+0.0
control
PDB
-0.1
+0.0
-0.5
+0.0
+0.2
control
PDB
-0.0
+0.1
-0.5
+0.2
-0.1
carbon source
M9+glycerol
+0.1
-0.1
-0.4
+0.1
-0.0
plant
Atlantic
-0.5
+0.1
+0.0
+0.2
-0.0
carbon source
M9+polygalacturonate
-0.4
+0.2
-0.2
-0.1
+0.2
carbon source
M9+polygalacturonate
+0.1
+0.3
-0.4
+0.1
-0.2
control
PDB
-0.5
+0.2
-0.0
+0.1
+0.2
control
LB
-0.1
-0.2
+0.0
+0.2
+0.1
carbon source
M9+polygalacturonate
-0.1
+0.4
-0.0
-0.1
-0.1
carbon source
M9+glycerol
-0.3
+0.2
+0.2
+0.0
-0.1
plant
Upstate
+0.2
-0.1
-0.1
+0.1
+0.1
plant
Atlantic
+0.8
-0.1
-0.9
+0.2
+0.2
control
PDB
-0.1
+0.2
-0.0
+0.2
+0.0
carbon source
M9+sucrose
-0.9
+0.8
+0.4
+0.1
-0.0
plant
Norland
+0.3
-0.2
+0.1
+0.0
+0.2
carbon source
M9+sucrose
-0.8
+0.9
+0.5
-0.0
-0.0
control
LB
+0.1
-0.0
-0.0
+0.4
+0.1
carbon source
M9+sucrose
+0.1
+1.1
-0.2
-0.2
-0.1
plant
Upstate
-0.1
+0.1
+0.5
+0.1
+0.0
plant
Atlantic
+0.2
-0.2
+0.6
-0.1
+0.4
plant
Atlantic
-0.3
+0.0
+0.7
+0.6
+0.3
plant
Atlantic
+0.8
-0.4
+0.6
+0.1
+0.4
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