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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS17470 and HGI48_RS17475 are separated by 20 nucleotides
HGI48_RS17475 and HGI48_RS17480 overlap by 9 nucleotides
HGI48_RS17480 and HGI48_RS17485 are separated by 246 nucleotides
HGI48_RS17485 and HGI48_RS17490 are separated by 112 nucleotides
HGI48_RS17470: HGI48_RS17470 - Gfo/Idh/MocA family oxidoreductase, at 3,911,397 to 3,912,398
_RS17470
HGI48_RS17475: HGI48_RS17475 - hypothetical protein, at 3,912,419 to 3,913,486
_RS17475
HGI48_RS17480: HGI48_RS17480 - thioesterase, at 3,913,478 to 3,914,275
_RS17480
HGI48_RS17485: HGI48_RS17485 - diaminopimelate decarboxylase, at 3,914,522 to 3,915,793
_RS17485
HGI48_RS17490: HGI48_RS17490 - LysR family transcriptional regulator, at 3,915,906 to 3,916,853
_RS17490
Group
Condition
HGI48
_RS17470
HGI48
_RS17475
HGI48
_RS17480
HGI48
_RS17485
HGI48
_RS17490
carbon source
M9+sucrose
-0.0
-0.1
-0.6
-2.2
-0.2
carbon source
M9+polygalacturonate
-0.2
+0.3
+0.1
-2.4
-0.4
carbon source
M9+sucrose
-0.0
+0.1
+0.1
-1.7
-1.0
carbon source
M9+glycerol
+0.1
-0.3
-0.4
-1.3
-0.3
carbon source
M9+polygalacturonate
+0.0
+0.1
-0.1
-1.4
-0.5
carbon source
M9+polygalacturonate
+0.3
+0.5
+0.0
-2.8
+0.2
carbon source
M9+sucrose
+0.4
-0.2
+0.1
-1.7
-0.1
carbon source
M9+glycerol
-0.1
-0.3
+0.0
-1.2
+0.3
carbon source
M9+glycerol
+0.1
+0.2
-0.1
-1.3
+0.1
carbon source
M9+glycerol
-0.1
-0.2
+0.3
-0.9
-0.2
carbon source
M9+glycerol
+0.2
-0.3
-0.3
-0.7
+0.2
plant
Atlantic
+0.2
-0.1
-0.4
-0.7
+0.1
plant
Norland
-0.1
-0.0
+0.5
-0.7
-0.5
carbon source
M9+glycerol
+0.1
-0.4
+0.0
-0.7
+0.2
control
PDB
-0.1
+0.0
-0.0
-0.3
-0.3
plant
Atlantic
-0.0
-0.2
+0.5
-1.0
+0.0
plant
Upstate
-0.1
-0.1
+0.1
-0.6
+0.3
plant
Upstate
-0.2
+0.2
+0.2
-0.5
-0.2
plant
Atlantic
+0.2
+0.0
+0.2
-1.1
+0.3
plant
Norland
-0.0
+0.0
-0.2
-0.3
+0.2
plant
Norland
+0.1
-0.2
+0.1
-0.1
-0.2
control
PDB
+0.1
-0.1
+0.3
-0.1
-0.4
plant
Upstate
+0.1
+0.1
-0.0
-0.7
+0.3
plant
Norland
+0.1
+0.1
-0.1
-0.3
+0.2
plant
Upstate
+0.1
+0.2
+0.2
-0.6
+0.2
plant
Atlantic
+0.0
+0.1
+0.8
-0.8
-0.0
plant
Atlantic
-0.0
+0.3
+0.3
-0.6
+0.2
plant
Atlantic
+0.2
+0.3
-0.1
-0.3
+0.2
plant
Upstate
+0.0
+0.2
+0.3
-0.5
+0.2
plant
Norland
+0.1
+0.0
+0.5
-0.4
+0.0
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