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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS17295 and HGI48_RS17300 are separated by 135 nucleotides
HGI48_RS17300 and HGI48_RS17305 are separated by 44 nucleotides
HGI48_RS17305 and HGI48_RS17310 are separated by 148 nucleotides
HGI48_RS17310 and HGI48_RS17315 are separated by 98 nucleotides
HGI48_RS17295: HGI48_RS17295 - Cache 3/Cache 2 fusion domain-containing protein, at 3,872,797 to 3,874,737
_RS17295
HGI48_RS17300: HGI48_RS17300 - biofilm peroxide resistance protein BsmA, at 3,874,873 to 3,875,241
_RS17300
HGI48_RS17305: HGI48_RS17305 - hypothetical protein, at 3,875,286 to 3,875,561
_RS17305
HGI48_RS17310: HGI48_RS17310 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 3,875,710 to 3,876,444
_RS17310
HGI48_RS17315: HGI48_RS17315 - ribonuclease R, at 3,876,543 to 3,879,020
_RS17315
Group
Condition
HGI48
_RS17295
HGI48
_RS17300
HGI48
_RS17305
HGI48
_RS17310
HGI48
_RS17315
plant
Atlantic
-0.0
+0.2
-0.5
N.D.
-0.4
carbon source
M9+sucrose
-0.1
+0.1
-0.7
N.D.
-0.1
plant
Atlantic
+0.1
+0.2
-1.0
N.D.
-0.1
plant
Upstate
-0.1
+0.3
-0.6
N.D.
-0.2
plant
Atlantic
+0.2
-0.4
+0.1
N.D.
-0.6
control
PDB
-0.1
-0.1
+0.2
N.D.
-0.6
carbon source
M9+sucrose
-0.1
-0.3
+0.2
N.D.
-0.3
carbon source
M9+sucrose
-0.2
+0.2
+0.2
N.D.
-0.4
plant
Atlantic
+0.1
+0.2
-0.1
N.D.
-0.4
carbon source
M9+polygalacturonate
-0.2
+0.1
+0.2
N.D.
-0.3
carbon source
M9+polygalacturonate
-0.1
+0.1
+0.2
N.D.
-0.3
control
PDB
-0.0
-0.1
+0.4
N.D.
-0.4
plant
Upstate
+0.2
+0.1
-0.2
N.D.
-0.2
control
LB
-0.1
+0.1
+0.2
N.D.
-0.2
plant
Norland
-0.0
+0.1
+0.4
N.D.
-0.4
control
PDB
+0.0
-0.1
+0.6
N.D.
-0.4
plant
Norland
-0.0
+0.1
+0.3
N.D.
-0.2
control
LB
-0.1
-0.2
+0.7
N.D.
-0.3
plant
Norland
+0.0
+0.2
+0.5
N.D.
-0.3
plant
Atlantic
+0.4
+0.2
+0.4
N.D.
-0.6
control
PDB
-0.0
+0.3
+0.7
N.D.
-0.3
control
LB
+0.2
+0.1
+0.4
N.D.
-0.2
carbon source
M9+glycerol
+0.2
-0.0
+0.1
N.D.
+0.3
plant
Atlantic
+0.2
-0.1
+0.7
N.D.
-0.1
plant
Upstate
+0.4
-0.0
+0.6
N.D.
-0.3
control
LB
+0.1
+0.0
+0.8
N.D.
-0.1
carbon source
M9+glycerol
-0.1
+0.1
+0.6
N.D.
+0.1
plant
Norland
+0.2
+0.1
+0.8
N.D.
-0.3
carbon source
M9+glycerol
-0.1
-0.3
+1.2
N.D.
+0.3
plant
Norland
+0.0
+0.0
+1.5
N.D.
-0.1
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