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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS17255 and HGI48_RS17260 are separated by 226 nucleotides
HGI48_RS17260 and HGI48_RS17265 overlap by 17 nucleotides
HGI48_RS17265 and HGI48_RS17270 are separated by 116 nucleotides
HGI48_RS17270 and HGI48_RS17275 are separated by 41 nucleotides
HGI48_RS17255: HGI48_RS17255 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 3,868,121 to 3,868,741
_RS17255
HGI48_RS17260: HGI48_RS17260 - Opacity-associated protein A, at 3,868,968 to 3,869,675
_RS17260
HGI48_RS17265: HGI48_RS17265 - DUF488 family protein, at 3,869,659 to 3,870,033
_RS17265
HGI48_RS17270: HGI48_RS17270 - 50S ribosomal protein L9, at 3,870,150 to 3,870,599
_RS17270
HGI48_RS17275: HGI48_RS17275 - 30S ribosomal protein S18, at 3,870,641 to 3,870,868
_RS17275
Group
Condition
HGI48
_RS17255
HGI48
_RS17260
HGI48
_RS17265
HGI48
_RS17270
HGI48
_RS17275
plant
Atlantic
-0.8
-0.3
+0.3
N.D.
N.D.
plant
Atlantic
+0.2
-0.1
-0.8
N.D.
N.D.
carbon source
M9+polygalacturonate
-0.1
-0.1
-0.3
N.D.
N.D.
control
LB
-0.1
-0.2
-0.3
N.D.
N.D.
control
LB
-0.1
+0.1
-0.4
N.D.
N.D.
carbon source
M9+polygalacturonate
-0.3
+0.4
-0.4
N.D.
N.D.
control
LB
+0.2
-0.1
-0.3
N.D.
N.D.
carbon source
M9+glycerol
+0.2
+0.0
-0.4
N.D.
N.D.
control
PDB
+0.2
-0.2
-0.3
N.D.
N.D.
plant
Atlantic
-0.6
+0.5
-0.1
N.D.
N.D.
plant
Norland
-0.2
+0.2
-0.1
N.D.
N.D.
plant
Upstate
-0.2
-0.2
+0.4
N.D.
N.D.
carbon source
M9+glycerol
-0.1
+0.2
-0.1
N.D.
N.D.
carbon source
M9+sucrose
-0.2
-0.2
+0.5
N.D.
N.D.
control
PDB
-0.1
-0.3
+0.4
N.D.
N.D.
plant
Atlantic
+0.2
+0.1
-0.2
N.D.
N.D.
plant
Upstate
-0.2
-0.0
+0.4
N.D.
N.D.
control
PDB
+0.3
+0.1
-0.3
N.D.
N.D.
plant
Norland
-0.1
+0.0
+0.3
N.D.
N.D.
plant
Atlantic
-0.2
-0.1
+0.5
N.D.
N.D.
carbon source
M9+polygalacturonate
-0.1
+0.2
+0.2
N.D.
N.D.
carbon source
M9+glycerol
+0.1
-0.1
+0.2
N.D.
N.D.
plant
Upstate
+0.1
+0.3
-0.1
N.D.
N.D.
carbon source
M9+glycerol
+0.1
-0.2
+0.4
N.D.
N.D.
plant
Atlantic
-0.1
+0.4
-0.0
N.D.
N.D.
control
PDB
+0.4
-0.1
-0.0
N.D.
N.D.
control
PDB
+0.3
+0.2
-0.1
N.D.
N.D.
control
PDB
+0.3
+0.0
+0.1
N.D.
N.D.
carbon source
M9+glycerol
+0.4
+0.0
-0.0
N.D.
N.D.
carbon source
M9+glycerol
+0.6
+0.1
+0.1
N.D.
N.D.
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