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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS17125 and HGI48_RS17130 are separated by 152 nucleotides
HGI48_RS17130 and HGI48_RS17135 are separated by 122 nucleotides
HGI48_RS17135 and HGI48_RS17140 are separated by 89 nucleotides
HGI48_RS17140 and HGI48_RS17145 are separated by 7 nucleotides
HGI48_RS17125: HGI48_RS17125 - hypothetical protein, at 3,838,146 to 3,838,478
_RS17125
HGI48_RS17130: HGI48_RS17130 - FlxA-like family protein, at 3,838,631 to 3,838,990
_RS17130
HGI48_RS17135: HGI48_RS17135 - FlxA-like family protein, at 3,839,113 to 3,839,475
_RS17135
HGI48_RS17140: HGI48_RS17140 - DUF3820 family protein, at 3,839,565 to 3,839,783
_RS17140
HGI48_RS17145: HGI48_RS17145 - NAD-dependent DNA ligase LigA, at 3,839,791 to 3,841,842
_RS17145
Group
Condition
HGI48
_RS17125
HGI48
_RS17130
HGI48
_RS17135
HGI48
_RS17140
HGI48
_RS17145
plant
Atlantic
N.D.
-0.5
-1.5
-0.5
N.D.
control
PDB
N.D.
-0.6
-0.4
-0.4
N.D.
plant
Upstate
N.D.
-0.3
-0.3
-0.6
N.D.
plant
Norland
N.D.
-0.2
-0.6
-0.3
N.D.
control
PDB
N.D.
-0.9
+0.0
-0.2
N.D.
carbon source
M9+polygalacturonate
N.D.
-0.1
+0.2
-0.8
N.D.
carbon source
M9+glycerol
N.D.
-0.3
-0.1
-0.2
N.D.
control
PDB
N.D.
-0.1
-0.2
-0.4
N.D.
plant
Upstate
N.D.
+0.6
-0.9
-0.3
N.D.
plant
Norland
N.D.
-0.1
-0.1
-0.4
N.D.
plant
Atlantic
N.D.
+0.2
-0.4
-0.3
N.D.
control
LB
N.D.
+0.1
-0.5
-0.0
N.D.
plant
Norland
N.D.
-0.1
-0.1
-0.2
N.D.
carbon source
M9+polygalacturonate
N.D.
+0.3
-0.1
-0.6
N.D.
carbon source
M9+glycerol
N.D.
-0.4
+0.1
-0.1
N.D.
control
LB
N.D.
+0.0
-0.2
-0.1
N.D.
plant
Atlantic
N.D.
+0.3
-0.4
-0.1
N.D.
plant
Upstate
N.D.
+0.2
-0.2
-0.2
N.D.
control
LB
N.D.
+0.2
-0.2
-0.1
N.D.
plant
Upstate
N.D.
-0.1
+0.1
-0.2
N.D.
carbon source
M9+sucrose
N.D.
+0.1
+0.0
-0.3
N.D.
control
PDB
N.D.
+0.2
-0.2
-0.0
N.D.
carbon source
M9+sucrose
N.D.
+0.0
+0.4
-0.4
N.D.
control
PDB
N.D.
+0.3
+0.0
-0.3
N.D.
plant
Upstate
N.D.
+0.4
-0.1
-0.1
N.D.
carbon source
M9+sucrose
N.D.
+0.5
-0.2
-0.0
N.D.
plant
Norland
N.D.
+0.6
+0.3
-0.4
N.D.
control
PDB
N.D.
+0.8
-0.3
+0.0
N.D.
plant
Atlantic
N.D.
+0.5
+0.5
-0.3
N.D.
plant
Atlantic
N.D.
+0.3
+0.7
-0.1
N.D.
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