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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS17060 and HGI48_RS17065 are separated by 226 nucleotides
HGI48_RS17065 and HGI48_RS17070 are separated by 63 nucleotides
HGI48_RS17070 and HGI48_RS17075 are separated by 9 nucleotides
HGI48_RS17075 and HGI48_RS17080 are separated by 60 nucleotides
HGI48_RS17060: HGI48_RS17060 - CTP synthase (glutamine hydrolyzing), at 3,817,081 to 3,818,718
_RS17060
HGI48_RS17065: HGI48_RS17065 - nucleoside triphosphate pyrophosphohydrolase, at 3,818,945 to 3,819,742
_RS17065
HGI48_RS17070: HGI48_RS17070 - GTP diphosphokinase, at 3,819,806 to 3,822,043
_RS17070
HGI48_RS17075: HGI48_RS17075 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 3,822,053 to 3,823,423
_RS17075
HGI48_RS17080: HGI48_RS17080 - two-component sensor histidine kinase BarA, at 3,823,484 to 3,826,249
_RS17080
Group
Condition
HGI48
_RS17060
HGI48
_RS17065
HGI48
_RS17070
HGI48
_RS17075
HGI48
_RS17080
carbon source
M9+sucrose
N.D.
-0.3
-0.6
-0.2
-0.0
carbon source
M9+sucrose
N.D.
-0.5
-0.5
+0.2
+0.1
carbon source
M9+sucrose
N.D.
-0.1
-0.6
+0.0
+0.2
plant
Upstate
N.D.
+0.1
-0.4
-0.1
+0.1
plant
Atlantic
N.D.
+0.2
-0.0
-0.2
-0.1
carbon source
M9+glycerol
N.D.
+0.5
+0.1
-0.4
-0.2
plant
Norland
N.D.
+0.2
-0.3
+0.1
-0.0
plant
Atlantic
N.D.
-0.2
-0.1
-0.1
+0.4
plant
Upstate
N.D.
+0.3
-0.1
-0.2
+0.0
carbon source
M9+glycerol
N.D.
+0.3
-0.1
+0.1
-0.3
plant
Norland
N.D.
+0.2
-0.3
+0.0
+0.2
carbon source
M9+glycerol
N.D.
+0.4
-0.1
-0.1
-0.2
plant
Norland
N.D.
+0.1
-0.1
-0.2
+0.3
carbon source
M9+polygalacturonate
N.D.
-0.2
+1.0
-0.2
-0.5
plant
Norland
N.D.
+0.3
-0.2
+0.0
+0.1
plant
Atlantic
N.D.
+0.1
-0.1
-0.1
+0.3
plant
Upstate
N.D.
+0.3
-0.2
+0.1
+0.1
plant
Atlantic
N.D.
+0.4
-0.1
-0.1
+0.1
plant
Atlantic
N.D.
+0.4
-0.5
-0.0
+0.5
carbon source
M9+polygalacturonate
N.D.
-0.4
+1.9
-0.3
-0.7
plant
Upstate
N.D.
+0.5
-0.2
-0.0
+0.1
plant
Atlantic
N.D.
+0.1
+0.1
-0.3
+0.6
plant
Norland
N.D.
+0.5
-0.1
+0.0
+0.3
carbon source
M9+polygalacturonate
N.D.
+0.1
+1.4
-0.0
-0.4
control
PDB
N.D.
+0.2
+0.4
-0.4
+1.5
control
PDB
N.D.
+0.0
+0.3
-0.1
+1.5
control
PDB
N.D.
+0.0
+0.4
+0.1
+1.3
control
PDB
N.D.
-0.5
+0.6
+0.0
+1.6
control
PDB
N.D.
+0.0
+0.7
+0.2
+1.6
control
PDB
N.D.
+0.4
+0.7
+0.0
+1.6
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