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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS16675 and HGI48_RS16680 are separated by 84 nucleotides
HGI48_RS16680 and HGI48_RS16685 are separated by 33 nucleotides
HGI48_RS16685 and HGI48_RS16690 overlap by 4 nucleotides
HGI48_RS16690 and HGI48_RS16695 are separated by 206 nucleotides
HGI48_RS16675: HGI48_RS16675 - S-methyl-5-thioribose-1-phosphate isomerase, at 3,736,922 to 3,737,953
_RS16675
HGI48_RS16680: HGI48_RS16680 - acireductone dioxygenase, at 3,738,038 to 3,738,580
_RS16680
HGI48_RS16685: HGI48_RS16685 - acireductone synthase, at 3,738,614 to 3,739,306
_RS16685
HGI48_RS16690: HGI48_RS16690 - methylthioribulose 1-phosphate dehydratase, at 3,739,303 to 3,739,917
_RS16690
HGI48_RS16695: HGI48_RS16695 - pyridoxal phosphate-dependent aminotransferase, at 3,740,124 to 3,741,281
_RS16695
Group
Condition
HGI48
_RS16675
HGI48
_RS16680
HGI48
_RS16685
HGI48
_RS16690
HGI48
_RS16695
plant
Upstate
+0.0
-2.1
-0.2
-0.0
-0.1
plant
Atlantic
-0.2
-1.8
+0.1
-0.1
-0.1
plant
Upstate
-0.3
-0.9
-0.1
-0.2
-0.0
carbon source
M9+polygalacturonate
-0.1
-1.0
+0.0
-0.2
-0.2
plant
Atlantic
+0.2
-1.4
-0.0
-0.1
-0.0
carbon source
M9+sucrose
-0.2
-0.8
+0.2
-0.7
+0.0
carbon source
M9+sucrose
-0.3
-0.2
+0.1
-0.8
-0.1
carbon source
M9+glycerol
+0.0
-1.0
-0.1
+0.1
-0.3
plant
Atlantic
+0.2
-0.7
+0.6
-1.0
-0.3
plant
Norland
+0.1
-0.8
+0.1
-0.3
-0.2
plant
Upstate
-0.0
-0.8
+0.1
-0.1
-0.1
carbon source
M9+sucrose
-0.1
-0.8
+0.0
+0.1
-0.1
carbon source
M9+glycerol
+0.1
-1.3
+0.1
+0.2
+0.1
carbon source
M9+glycerol
+0.0
-0.8
-0.0
+0.3
-0.1
carbon source
M9+glycerol
-0.3
-0.3
-0.1
+0.3
-0.1
control
PDB
+0.1
-1.3
+0.0
+0.7
-0.0
plant
Norland
-0.3
-0.4
+0.2
+0.2
-0.0
plant
Atlantic
+0.5
-0.4
-0.6
+0.2
+0.1
control
PDB
-0.1
-0.3
+0.1
+0.4
-0.3
plant
Norland
-0.1
+0.3
+0.3
-0.3
-0.2
plant
Norland
+0.2
+0.2
+0.1
-0.6
+0.1
carbon source
M9+polygalacturonate
-0.6
+0.2
+0.2
+0.2
+0.1
plant
Upstate
-0.1
+0.5
-0.0
-0.3
+0.1
control
LB
-0.1
+0.5
+0.1
-0.0
-0.3
carbon source
M9+polygalacturonate
+0.1
+1.1
-0.4
-0.2
-0.4
plant
Atlantic
+0.1
-0.6
+0.1
+0.6
+0.1
carbon source
M9+glycerol
-0.3
+0.8
-0.0
+0.2
-0.1
control
LB
-0.0
+0.3
+0.1
+0.3
+0.0
plant
Norland
+0.1
+0.3
+0.1
+0.5
+0.0
carbon source
M9+glycerol
-0.2
+0.4
+0.2
+0.7
+0.0
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