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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS16455 and HGI48_RS16460 are separated by 87 nucleotides
HGI48_RS16460 and HGI48_RS16465 are separated by 179 nucleotides
HGI48_RS16465 and HGI48_RS16470 overlap by 7 nucleotides
HGI48_RS16470 and HGI48_RS16475 are separated by 205 nucleotides
HGI48_RS16455: HGI48_RS16455 - YbdD/YjiX family protein, at 3,687,665 to 3,687,868
_RS16455
HGI48_RS16460: HGI48_RS16460 - carbon starvation protein A, at 3,687,956 to 3,690,103
_RS16460
HGI48_RS16465: HGI48_RS16465 - two-component system response regulator BtsR, at 3,690,283 to 3,691,008
_RS16465
HGI48_RS16470: HGI48_RS16470 - sensor histidine kinase, at 3,691,002 to 3,692,693
_RS16470
HGI48_RS16475: HGI48_RS16475 - GntR family transcriptional regulator, at 3,692,899 to 3,693,672
_RS16475
Group
Condition
HGI48
_RS16455
HGI48
_RS16460
HGI48
_RS16465
HGI48
_RS16470
HGI48
_RS16475
control
PDB
-0.6
-0.0
-0.1
+0.0
+0.2
plant
Norland
-0.5
+0.1
-0.2
+0.1
+0.0
plant
Atlantic
+0.1
-0.3
+0.3
-0.3
-0.1
control
PDB
+0.0
-0.1
-0.2
+0.1
+0.2
carbon source
M9+polygalacturonate
-0.6
+0.0
+0.1
+0.0
+0.6
control
PDB
+0.1
-0.2
-0.0
-0.0
+0.4
plant
Norland
-0.3
-0.1
+0.3
+0.0
+0.2
plant
Upstate
+0.1
-0.1
-0.0
+0.1
+0.2
plant
Norland
-0.1
-0.1
+0.2
+0.0
+0.3
carbon source
M9+polygalacturonate
+0.1
-0.0
-0.2
+0.3
+0.3
carbon source
M9+sucrose
-0.1
+0.2
+0.2
+0.2
+0.1
control
LB
+0.1
-0.0
+0.2
+0.1
+0.1
plant
Norland
+0.3
-0.2
+0.2
-0.0
+0.3
plant
Upstate
+0.5
-0.0
+0.1
-0.1
+0.0
carbon source
M9+glycerol
-0.1
-0.1
+0.2
+0.1
+0.4
carbon source
M9+sucrose
+0.3
+0.1
-0.1
+0.2
+0.2
control
PDB
+0.1
+0.0
+0.3
+0.1
+0.2
control
PDB
+0.3
+0.2
+0.2
-0.2
+0.4
control
PDB
+0.6
-0.1
+0.1
-0.0
+0.2
control
LB
+0.3
+0.1
+0.3
+0.0
+0.1
plant
Atlantic
-0.2
+0.1
+0.4
+0.4
+0.2
plant
Atlantic
+0.7
-0.2
+0.0
+0.1
+0.3
plant
Norland
+0.2
+0.0
+0.3
+0.0
+0.4
plant
Upstate
+0.4
+0.2
+0.2
+0.1
+0.1
carbon source
M9+glycerol
+0.3
+0.1
+0.0
-0.1
+0.9
carbon source
M9+glycerol
+0.5
-0.0
-0.1
-0.0
+0.9
plant
Atlantic
+0.6
-0.2
+0.2
-0.0
+0.6
plant
Atlantic
+0.7
-0.1
+0.1
+0.1
+0.7
carbon source
M9+glycerol
+0.3
-0.1
+0.3
+0.0
+1.0
carbon source
M9+glycerol
+0.2
-0.0
+0.3
+0.3
+0.9
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