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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS16410 and HGI48_RS16415 overlap by 14 nucleotides
HGI48_RS16415 and HGI48_RS16420 are separated by 397 nucleotides
HGI48_RS16420 and HGI48_RS16425 are separated by 97 nucleotides
HGI48_RS16425 and HGI48_RS16430 are separated by 417 nucleotides
HGI48_RS16410: HGI48_RS16410 - ABC transporter permease, at 3,676,407 to 3,677,444
_RS16410
HGI48_RS16415: HGI48_RS16415 - sugar ABC transporter permease YjfF, at 3,677,431 to 3,678,423
_RS16415
HGI48_RS16420: HGI48_RS16420 - phophatidylserine decarboxylase associated domain-containing protein, at 3,678,821 to 3,680,245
_RS16420
HGI48_RS16425: HGI48_RS16425 - C69 family dipeptidase, at 3,680,343 to 3,682,031
_RS16425
HGI48_RS16430: HGI48_RS16430 - aldehyde dehydrogenase EutE, at 3,682,449 to 3,683,828
_RS16430
Group
Condition
HGI48
_RS16410
HGI48
_RS16415
HGI48
_RS16420
HGI48
_RS16425
HGI48
_RS16430
plant
Atlantic
-0.5
+0.2
-0.2
-0.2
-0.2
control
LB
-0.8
-0.0
+0.0
-0.1
+0.1
plant
Atlantic
-0.4
+0.1
-0.0
-0.1
-0.2
plant
Norland
-0.3
+0.2
-0.4
-0.0
-0.0
plant
Norland
-0.0
+0.1
+0.0
-0.3
-0.1
plant
Upstate
-0.1
+0.2
+0.1
-0.1
-0.2
plant
Upstate
-0.3
-0.1
+0.3
+0.1
-0.1
control
PDB
+0.2
-0.0
+0.1
-0.2
-0.2
plant
Norland
+0.1
-0.2
+0.5
-0.3
-0.2
carbon source
M9+glycerol
-0.2
-0.1
-0.0
-0.0
+0.3
carbon source
M9+glycerol
-0.3
+0.2
+0.2
-0.0
-0.1
carbon source
M9+glycerol
-0.4
+0.1
+0.2
-0.0
+0.2
carbon source
M9+sucrose
+0.2
+0.4
-0.2
-0.1
-0.2
plant
Norland
+0.3
+0.1
+0.1
-0.1
-0.4
carbon source
M9+polygalacturonate
-0.4
+0.1
+0.1
-0.1
+0.3
plant
Atlantic
+0.4
+0.2
-0.1
-0.1
-0.3
plant
Atlantic
-0.2
+0.2
+0.0
-0.1
+0.1
control
LB
-0.1
+0.0
+0.1
-0.2
+0.3
carbon source
M9+polygalacturonate
+0.1
-0.0
+0.2
+0.1
-0.2
plant
Upstate
+0.1
+0.2
-0.1
-0.2
+0.0
carbon source
M9+polygalacturonate
-0.1
+0.1
+0.3
-0.1
-0.0
plant
Norland
-0.3
+0.2
+0.2
+0.1
-0.0
carbon source
M9+sucrose
+0.1
-0.1
+0.3
-0.1
+0.1
control
PDB
+0.2
-0.1
+0.2
-0.1
+0.1
plant
Atlantic
-0.0
-0.0
+0.5
-0.0
+0.0
carbon source
M9+glycerol
-0.1
+0.3
+0.1
-0.1
+0.2
control
LB
-0.0
+0.2
+0.4
-0.0
-0.0
carbon source
M9+glycerol
-0.2
+0.3
+0.2
+0.1
+0.3
plant
Atlantic
-0.1
+0.3
+0.1
-0.1
+0.6
control
PDB
+0.4
+0.1
+0.4
+0.2
-0.0
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