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Cofit
Fitness for 5 genes in
Dickeya dianthicola 67-19
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500 nt
HGI48_RS16320 and HGI48_RS16325 are separated by 57 nucleotides
HGI48_RS16325 and HGI48_RS16330 are separated by 76 nucleotides
HGI48_RS16330 and HGI48_RS16335 are separated by 7 nucleotides
HGI48_RS16335 and HGI48_RS16340 are separated by 305 nucleotides
HGI48_RS16320: HGI48_RS16320 - tRNA-Arg, at 3,658,793 to 3,658,869
_RS16320
HGI48_RS16325: HGI48_RS16325 - tRNA-Arg, at 3,658,927 to 3,659,003
_RS16325
HGI48_RS16330: HGI48_RS16330 - tRNA-Arg, at 3,659,080 to 3,659,156
_RS16330
HGI48_RS16335: HGI48_RS16335 - tRNA-Ser, at 3,659,164 to 3,659,256
_RS16335
HGI48_RS16340: HGI48_RS16340 - carbon storage regulator CsrA, at 3,659,562 to 3,659,747
_RS16340
Group
Condition
HGI48
_RS16320
HGI48
_RS16325
HGI48
_RS16330
HGI48
_RS16335
HGI48
_RS16340
carbon source
M9+sucrose
-1.1
N.D.
N.D.
N.D.
N.D.
plant
Atlantic
-1.0
N.D.
N.D.
N.D.
N.D.
control
PDB
-1.0
N.D.
N.D.
N.D.
N.D.
control
PDB
-0.7
N.D.
N.D.
N.D.
N.D.
plant
Norland
-0.6
N.D.
N.D.
N.D.
N.D.
control
LB
-0.5
N.D.
N.D.
N.D.
N.D.
carbon source
M9+glycerol
-0.4
N.D.
N.D.
N.D.
N.D.
control
LB
-0.4
N.D.
N.D.
N.D.
N.D.
carbon source
M9+glycerol
-0.4
N.D.
N.D.
N.D.
N.D.
plant
Upstate
-0.3
N.D.
N.D.
N.D.
N.D.
plant
Upstate
-0.3
N.D.
N.D.
N.D.
N.D.
plant
Norland
-0.3
N.D.
N.D.
N.D.
N.D.
plant
Atlantic
-0.3
N.D.
N.D.
N.D.
N.D.
control
PDB
-0.3
N.D.
N.D.
N.D.
N.D.
carbon source
M9+glycerol
-0.3
N.D.
N.D.
N.D.
N.D.
control
PDB
-0.3
N.D.
N.D.
N.D.
N.D.
plant
Atlantic
-0.3
N.D.
N.D.
N.D.
N.D.
plant
Norland
-0.2
N.D.
N.D.
N.D.
N.D.
carbon source
M9+polygalacturonate
-0.2
N.D.
N.D.
N.D.
N.D.
control
PDB
-0.2
N.D.
N.D.
N.D.
N.D.
plant
Atlantic
-0.2
N.D.
N.D.
N.D.
N.D.
plant
Upstate
-0.2
N.D.
N.D.
N.D.
N.D.
plant
Atlantic
-0.2
N.D.
N.D.
N.D.
N.D.
control
PDB
-0.2
N.D.
N.D.
N.D.
N.D.
control
LB
-0.2
N.D.
N.D.
N.D.
N.D.
carbon source
M9+sucrose
+0.3
N.D.
N.D.
N.D.
N.D.
plant
Norland
+0.3
N.D.
N.D.
N.D.
N.D.
carbon source
M9+sucrose
+0.3
N.D.
N.D.
N.D.
N.D.
carbon source
M9+polygalacturonate
+0.4
N.D.
N.D.
N.D.
N.D.
carbon source
M9+glycerol
+0.5
N.D.
N.D.
N.D.
N.D.
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