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Gene
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Cofit
Fitness for 5 genes in
Dickeya dianthicola 67-19
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500 nt
HGI48_RS16190 and HGI48_RS16195 are separated by 230 nucleotides
HGI48_RS16195 and HGI48_RS16200 are separated by 66 nucleotides
HGI48_RS16200 and HGI48_RS16205 are separated by 119 nucleotides
HGI48_RS16205 and HGI48_RS16210 are separated by 168 nucleotides
HGI48_RS16190: HGI48_RS16190 - endonuclease/exonuclease/phosphatase family protein, at 3,632,226 to 3,633,017
_RS16190
HGI48_RS16195: HGI48_RS16195 - tRNA-Asp, at 3,633,248 to 3,633,324
_RS16195
HGI48_RS16200: HGI48_RS16200 - 5S ribosomal RNA, at 3,633,391 to 3,633,506
_RS16200
HGI48_RS16205: HGI48_RS16205 - 23S ribosomal RNA, at 3,633,626 to 3,636,538
_RS16205
HGI48_RS16210: HGI48_RS16210 - tRNA-Ala, at 3,636,707 to 3,636,782
_RS16210
Group
Condition
HGI48
_RS16190
HGI48
_RS16195
HGI48
_RS16200
HGI48
_RS16205
HGI48
_RS16210
control
PDB
-0.8
N.D.
N.D.
-0.6
N.D.
plant
Atlantic
+0.5
N.D.
N.D.
-1.7
N.D.
control
PDB
-0.4
N.D.
N.D.
-0.6
N.D.
control
LB
-0.2
N.D.
N.D.
-0.7
N.D.
control
LB
+0.0
N.D.
N.D.
-0.9
N.D.
control
PDB
-0.5
N.D.
N.D.
-0.4
N.D.
plant
Atlantic
+0.1
N.D.
N.D.
-0.9
N.D.
carbon source
M9+glycerol
+0.4
N.D.
N.D.
-1.3
N.D.
control
PDB
-0.7
N.D.
N.D.
+0.0
N.D.
carbon source
M9+glycerol
+0.3
N.D.
N.D.
-0.8
N.D.
carbon source
M9+sucrose
+0.4
N.D.
N.D.
-0.9
N.D.
carbon source
M9+glycerol
+0.5
N.D.
N.D.
-0.9
N.D.
control
LB
+0.2
N.D.
N.D.
-0.4
N.D.
control
PDB
-0.4
N.D.
N.D.
+0.1
N.D.
carbon source
M9+glycerol
+0.7
N.D.
N.D.
-0.9
N.D.
carbon source
M9+glycerol
+0.8
N.D.
N.D.
-1.0
N.D.
carbon source
M9+polygalacturonate
+0.5
N.D.
N.D.
-0.3
N.D.
carbon source
M9+sucrose
+0.4
N.D.
N.D.
-0.3
N.D.
control
PDB
-0.7
N.D.
N.D.
+1.0
N.D.
plant
Upstate
+0.3
N.D.
N.D.
+0.2
N.D.
carbon source
M9+polygalacturonate
+0.0
N.D.
N.D.
+0.5
N.D.
carbon source
M9+sucrose
+0.4
N.D.
N.D.
+0.2
N.D.
plant
Norland
+0.5
N.D.
N.D.
+0.2
N.D.
plant
Atlantic
+0.4
N.D.
N.D.
+0.4
N.D.
plant
Atlantic
+0.1
N.D.
N.D.
+0.7
N.D.
plant
Norland
+0.4
N.D.
N.D.
+0.6
N.D.
carbon source
M9+glycerol
+0.7
N.D.
N.D.
+0.3
N.D.
plant
Norland
+0.3
N.D.
N.D.
+0.9
N.D.
plant
Atlantic
+0.3
N.D.
N.D.
+1.1
N.D.
plant
Atlantic
+0.2
N.D.
N.D.
+1.5
N.D.
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