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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS16125 and HGI48_RS16130 are separated by 108 nucleotides
HGI48_RS16130 and HGI48_RS16135 are separated by 30 nucleotides
HGI48_RS16135 and HGI48_RS16140 are separated by 217 nucleotides
HGI48_RS16140 and HGI48_RS16145 are separated by 8 nucleotides
HGI48_RS16125: HGI48_RS16125 - YacC family pilotin-like protein, at 3,621,489 to 3,621,836
_RS16125
HGI48_RS16130: HGI48_RS16130 - polyamine aminopropyltransferase, at 3,621,945 to 3,622,808
_RS16130
HGI48_RS16135: HGI48_RS16135 - adenosylmethionine decarboxylase, at 3,622,839 to 3,623,633
_RS16135
HGI48_RS16140: HGI48_RS16140 - glutaredoxin-like protein NrdH, at 3,623,851 to 3,624,084
_RS16140
HGI48_RS16145: HGI48_RS16145 - class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI, at 3,624,093 to 3,624,500
_RS16145
Group
Condition
HGI48
_RS16125
HGI48
_RS16130
HGI48
_RS16135
HGI48
_RS16140
HGI48
_RS16145
carbon source
M9+sucrose
-0.8
-1.0
-0.5
-0.7
-0.2
carbon source
M9+sucrose
-0.7
-0.9
-0.4
-0.6
-0.3
carbon source
M9+sucrose
-0.8
-1.1
-0.5
+0.0
-0.1
carbon source
M9+polygalacturonate
-0.2
-1.0
-0.4
-0.3
+0.0
carbon source
M9+polygalacturonate
+0.5
-0.8
-0.6
-0.5
-0.2
carbon source
M9+polygalacturonate
+0.1
-1.0
-0.5
+0.2
-0.1
plant
Atlantic
-0.2
-0.4
-0.0
-0.0
-0.0
control
LB
-0.5
+0.0
-0.0
-0.0
+0.1
plant
Norland
-0.4
+0.1
+0.1
-0.2
+0.2
plant
Upstate
-0.3
+0.2
+0.0
+0.1
-0.1
plant
Norland
-0.5
+0.1
+0.1
+0.3
-0.1
plant
Norland
+0.2
-0.1
+0.1
-0.3
+0.1
control
LB
-0.2
+0.0
-0.0
+0.2
+0.2
control
PDB
-0.5
+0.4
+0.5
+0.0
-0.2
carbon source
M9+glycerol
-0.1
+0.2
+0.2
-0.0
+0.0
plant
Upstate
+0.2
-0.1
-0.2
+0.1
+0.2
carbon source
M9+glycerol
-0.2
+0.0
+0.2
-0.0
+0.3
plant
Atlantic
+0.4
+0.0
-0.3
+0.2
+0.2
plant
Norland
+0.4
+0.1
+0.1
+0.3
-0.4
carbon source
M9+glycerol
+0.3
+0.1
+0.2
+0.2
-0.2
carbon source
M9+glycerol
+0.3
+0.1
+0.3
+0.1
-0.0
plant
Atlantic
-0.2
+0.1
+0.3
+0.3
+0.3
plant
Atlantic
+0.4
+0.2
+0.1
-0.0
+0.2
plant
Upstate
+0.0
+0.2
+0.2
+0.4
+0.0
control
PDB
-0.2
+0.6
+0.4
+0.0
+0.2
plant
Norland
+0.7
+0.2
+0.2
-0.1
+0.1
control
PDB
-0.1
+0.5
+0.4
+0.1
+0.2
control
PDB
-0.1
+0.5
+0.4
+0.2
+0.3
control
PDB
+0.0
+0.5
+0.5
+0.0
+0.3
control
PDB
+0.4
+0.4
+0.5
+0.3
-0.1
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