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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS16080 and HGI48_RS16085 are separated by 68 nucleotides
HGI48_RS16085 and HGI48_RS16090 overlap by 4 nucleotides
HGI48_RS16090 and HGI48_RS16095 are separated by 126 nucleotides
HGI48_RS16095 and HGI48_RS16100 are separated by 43 nucleotides
HGI48_RS16080: HGI48_RS16080 - aspartate 1-decarboxylase, at 3,613,813 to 3,614,193
_RS16080
HGI48_RS16085: HGI48_RS16085 - ABC transporter permease, at 3,614,262 to 3,615,032
_RS16085
HGI48_RS16090: HGI48_RS16090 - ABC transporter ATP-binding protein, at 3,615,029 to 3,615,952
_RS16090
HGI48_RS16095: HGI48_RS16095 - carbonate dehydratase, at 3,616,079 to 3,616,720
_RS16095
HGI48_RS16100: HGI48_RS16100 - hypoxanthine phosphoribosyltransferase, at 3,616,764 to 3,617,294
_RS16100
Group
Condition
HGI48
_RS16080
HGI48
_RS16085
HGI48
_RS16090
HGI48
_RS16095
HGI48
_RS16100
carbon source
M9+polygalacturonate
-2.9
-0.3
-0.2
N.D.
-0.2
carbon source
M9+polygalacturonate
-2.7
-0.8
-0.2
N.D.
+0.5
carbon source
M9+polygalacturonate
-1.9
-0.4
-0.2
N.D.
+0.3
carbon source
M9+sucrose
-1.8
-0.6
+0.1
N.D.
+0.2
carbon source
M9+sucrose
-1.9
-0.1
+0.3
N.D.
-0.3
plant
Atlantic
+0.0
+0.0
-0.9
N.D.
-1.1
carbon source
M9+glycerol
-1.4
-0.0
-0.2
N.D.
-0.2
carbon source
M9+sucrose
-1.9
-0.4
+0.5
N.D.
-0.0
control
LB
-0.2
+0.2
-0.5
N.D.
-1.1
carbon source
M9+glycerol
-0.5
-0.2
-0.6
N.D.
-0.4
carbon source
M9+glycerol
-0.7
-0.3
-0.2
N.D.
-0.2
carbon source
M9+glycerol
-0.2
+0.1
-0.4
N.D.
-0.7
plant
Norland
-0.1
-0.3
-0.3
N.D.
-0.5
plant
Atlantic
-0.3
+0.1
-0.1
N.D.
-0.9
carbon source
M9+glycerol
-0.6
-0.2
+0.3
N.D.
-0.6
plant
Upstate
-0.1
-0.1
-0.0
N.D.
-0.8
plant
Atlantic
+0.0
-0.1
-0.3
N.D.
-0.6
carbon source
M9+glycerol
-0.9
-0.0
+0.2
N.D.
-0.2
plant
Norland
-0.2
-0.2
-0.3
N.D.
+0.2
plant
Upstate
-0.0
-0.2
+0.3
N.D.
-0.6
control
PDB
+0.1
+0.0
-0.2
N.D.
-0.4
plant
Upstate
-0.4
-0.1
+0.7
N.D.
-0.6
plant
Atlantic
+0.3
-0.1
-0.2
N.D.
-0.4
plant
Upstate
-0.0
-0.1
+0.2
N.D.
-0.4
control
LB
-0.1
-0.1
+0.5
N.D.
-0.5
control
LB
-0.1
-0.3
+0.3
N.D.
+0.2
control
PDB
-0.0
-0.1
+0.6
N.D.
-0.3
control
PDB
+0.1
+0.3
+0.4
N.D.
-0.5
control
PDB
+0.1
-0.1
+0.6
N.D.
-0.3
plant
Upstate
-0.1
+0.1
+0.9
N.D.
-0.4
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