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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS16070 and HGI48_RS16075 are separated by 15 nucleotides
HGI48_RS16075 and HGI48_RS16080 are separated by 25 nucleotides
HGI48_RS16080 and HGI48_RS16085 are separated by 68 nucleotides
HGI48_RS16085 and HGI48_RS16090 overlap by 4 nucleotides
HGI48_RS16070: HGI48_RS16070 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 3,612,123 to 3,612,917
_RS16070
HGI48_RS16075: HGI48_RS16075 - pantoate--beta-alanine ligase, at 3,612,933 to 3,613,787
_RS16075
HGI48_RS16080: HGI48_RS16080 - aspartate 1-decarboxylase, at 3,613,813 to 3,614,193
_RS16080
HGI48_RS16085: HGI48_RS16085 - ABC transporter permease, at 3,614,262 to 3,615,032
_RS16085
HGI48_RS16090: HGI48_RS16090 - ABC transporter ATP-binding protein, at 3,615,029 to 3,615,952
_RS16090
Group
Condition
HGI48
_RS16070
HGI48
_RS16075
HGI48
_RS16080
HGI48
_RS16085
HGI48
_RS16090
carbon source
M9+polygalacturonate
-3.0
-2.0
-2.7
-0.8
-0.2
carbon source
M9+polygalacturonate
-3.1
-2.1
-2.9
-0.3
-0.2
carbon source
M9+polygalacturonate
-3.4
-2.6
-1.9
-0.4
-0.2
carbon source
M9+sucrose
-2.5
-2.4
-1.9
-0.4
+0.5
carbon source
M9+sucrose
-2.9
-1.3
-1.8
-0.6
+0.1
carbon source
M9+sucrose
-2.4
-1.6
-1.9
-0.1
+0.3
carbon source
M9+glycerol
-2.0
-1.3
-1.4
-0.0
-0.2
carbon source
M9+glycerol
-1.3
-0.5
-0.9
-0.0
+0.2
carbon source
M9+glycerol
-0.4
-0.1
-0.7
-0.3
-0.2
carbon source
M9+glycerol
-0.4
+0.0
-0.5
-0.2
-0.6
carbon source
M9+glycerol
-0.7
-0.2
-0.6
-0.2
+0.3
plant
Upstate
-0.3
-0.6
-0.1
-0.1
-0.0
plant
Atlantic
-0.0
-0.4
-0.4
-0.1
-0.1
plant
Norland
-0.1
-0.1
-0.1
-0.3
-0.3
carbon source
M9+glycerol
-0.1
-0.2
-0.2
+0.1
-0.4
plant
Norland
+0.1
+0.0
-0.2
-0.2
-0.3
control
LB
-0.0
+0.1
-0.2
+0.2
-0.5
plant
Atlantic
-0.1
+0.3
-0.3
+0.1
-0.1
plant
Atlantic
-0.4
+0.4
+0.3
-0.1
-0.2
control
LB
+0.2
+0.0
-0.1
-0.3
+0.3
plant
Atlantic
+0.4
+0.7
+0.0
+0.0
-0.9
control
LB
-0.2
+0.3
-0.1
-0.1
+0.5
plant
Upstate
-0.1
+0.4
-0.4
-0.1
+0.7
plant
Upstate
-0.3
-0.1
-0.1
+0.1
+0.9
control
PDB
+0.4
+0.5
+0.1
+0.0
-0.2
control
PDB
+0.1
+0.4
-0.0
-0.1
+0.6
control
PDB
+0.4
+0.2
+0.1
+0.3
+0.1
control
PDB
-0.0
+0.4
+0.1
-0.1
+0.6
control
PDB
+0.2
+0.3
+0.1
+0.3
+0.4
control
PDB
+0.5
+0.7
+0.0
+0.2
+0.4
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