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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS16030 and HGI48_RS16035 are separated by 104 nucleotides
HGI48_RS16035 and HGI48_RS16040 are separated by 307 nucleotides
HGI48_RS16040 and HGI48_RS16045 are separated by 12 nucleotides
HGI48_RS16045 and HGI48_RS16050 are separated by 171 nucleotides
HGI48_RS16030: HGI48_RS16030 - bifunctional glycosyl transferase/transpeptidase, at 3,601,699 to 3,604,197
_RS16030
HGI48_RS16035: HGI48_RS16035 - ATP-dependent helicase HrpB, at 3,604,302 to 3,606,803
_RS16035
HGI48_RS16040: HGI48_RS16040 - RNA 2',3'-cyclic phosphodiesterase, at 3,607,111 to 3,607,644
_RS16040
HGI48_RS16045: HGI48_RS16045 - DNA/RNA nuclease SfsA, at 3,607,657 to 3,608,376
_RS16045
HGI48_RS16050: HGI48_RS16050 - RNA polymerase-binding protein DksA, at 3,608,548 to 3,609,003
_RS16050
Group
Condition
HGI48
_RS16030
HGI48
_RS16035
HGI48
_RS16040
HGI48
_RS16045
HGI48
_RS16050
plant
Atlantic
-0.0
-0.1
+0.1
-0.0
-3.5
plant
Atlantic
-0.2
+0.6
-0.4
-0.0
-3.6
plant
Upstate
-0.2
+0.2
-0.1
+0.0
-3.5
plant
Upstate
-0.5
-0.2
+0.0
-0.1
-2.7
plant
Norland
-0.3
-0.4
-0.1
-0.3
-2.3
plant
Atlantic
-0.3
+0.2
+0.4
-0.2
-3.5
plant
Norland
-0.8
+0.1
-0.1
-0.3
-2.1
carbon source
M9+sucrose
-0.1
+0.0
-1.0
-0.2
-2.0
plant
Atlantic
+0.6
-0.4
+0.2
+0.0
-3.6
carbon source
M9+polygalacturonate
-0.6
-0.5
-0.4
-0.5
-0.9
plant
Norland
-0.0
+0.0
-0.1
-0.2
-2.5
plant
Upstate
-0.9
+0.3
-0.1
-0.2
-1.8
carbon source
M9+polygalacturonate
-0.7
-0.3
+0.2
-0.1
-1.8
carbon source
M9+glycerol
+0.4
+0.0
-0.2
+0.0
-3.0
plant
Atlantic
+0.3
+0.4
-0.7
-0.1
-2.4
carbon source
M9+sucrose
-0.0
+0.1
-0.6
-0.0
-2.0
carbon source
M9+sucrose
-0.1
+0.4
-0.2
-0.5
-2.1
plant
Norland
+0.1
-0.1
+0.0
+0.0
-2.5
plant
Atlantic
-0.5
-0.0
-0.2
+0.2
-1.9
plant
Upstate
-0.5
+0.2
+0.2
-0.2
-1.8
plant
Norland
-0.2
-0.0
-0.1
+0.0
-1.8
control
LB
-0.2
-0.1
-0.2
+0.0
-1.5
control
LB
-0.6
+0.3
+0.0
+0.0
-1.5
control
LB
-0.2
+0.0
+0.2
-0.1
-1.5
carbon source
M9+glycerol
+0.5
+0.1
-0.5
-0.2
-0.8
plant
Norland
+0.5
+0.6
+0.0
-0.3
-1.4
carbon source
M9+glycerol
+1.7
-0.3
+0.0
-0.1
-0.9
control
PDB
+0.4
+0.3
-0.4
+0.0
+0.6
control
PDB
-0.1
+0.4
-0.1
+0.1
+1.1
control
PDB
+0.9
+0.0
+0.3
-0.1
+0.8
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