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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS15845 and HGI48_RS15850 are separated by 49 nucleotides
HGI48_RS15850 and HGI48_RS15855 are separated by 358 nucleotides
HGI48_RS15855 and HGI48_RS15860 are separated by 114 nucleotides
HGI48_RS15860 and HGI48_RS15865 are separated by 134 nucleotides
HGI48_RS15845: HGI48_RS15845 - anti-sigma-E factor RseA, at 3,563,687 to 3,564,352
_RS15845
HGI48_RS15850: HGI48_RS15850 - RNA polymerase sigma factor RpoE, at 3,564,402 to 3,564,977
_RS15850
HGI48_RS15855: HGI48_RS15855 - L-aspartate oxidase, at 3,565,336 to 3,566,937
_RS15855
HGI48_RS15860: HGI48_RS15860 - tRNA1(Val) (adenine(37)-N6)-methyltransferase, at 3,567,052 to 3,567,795
_RS15860
HGI48_RS15865: HGI48_RS15865 - ATP-dependent RNA helicase SrmB, at 3,567,930 to 3,569,282
_RS15865
Group
Condition
HGI48
_RS15845
HGI48
_RS15850
HGI48
_RS15855
HGI48
_RS15860
HGI48
_RS15865
carbon source
M9+sucrose
N.D.
-0.8
-1.7
-0.6
-0.4
carbon source
M9+sucrose
N.D.
-0.7
-1.5
-0.0
-0.5
control
PDB
N.D.
-1.5
-0.1
-0.4
-0.5
control
PDB
N.D.
-1.2
-0.3
-0.4
-0.5
control
PDB
N.D.
-1.6
-0.1
-0.1
-0.5
carbon source
M9+sucrose
N.D.
-0.4
-1.7
+0.2
-0.4
control
PDB
N.D.
-1.3
-0.0
-0.3
-0.4
plant
Atlantic
N.D.
-0.3
-0.2
-0.3
-1.0
plant
Atlantic
N.D.
+0.5
-0.4
-0.5
-1.1
control
PDB
N.D.
-1.1
-0.2
+0.5
-0.6
control
PDB
N.D.
-0.9
-0.1
+0.3
-0.5
carbon source
M9+polygalacturonate
N.D.
-0.1
-1.1
+0.1
-0.0
plant
Atlantic
N.D.
+0.2
-0.3
-0.5
-0.5
plant
Norland
N.D.
-0.3
-0.1
+0.0
-0.8
carbon source
M9+polygalacturonate
N.D.
+0.1
-1.0
-0.4
+0.3
plant
Upstate
N.D.
+0.1
-0.3
+0.2
-0.9
plant
Norland
N.D.
+0.1
-0.0
+0.1
-1.0
carbon source
M9+glycerol
N.D.
+0.0
-0.9
-0.1
+0.3
carbon source
M9+polygalacturonate
N.D.
-0.0
-1.0
+0.3
+0.0
plant
Upstate
N.D.
-0.1
+0.2
+0.1
-0.9
plant
Atlantic
N.D.
-0.4
-0.1
+0.3
-0.4
plant
Norland
N.D.
-0.1
+0.1
+0.3
-0.9
plant
Upstate
N.D.
+0.1
-0.0
+0.2
-0.7
plant
Atlantic
N.D.
+0.2
+0.2
+0.2
-0.8
control
LB
N.D.
+0.0
+0.2
+0.3
-0.5
plant
Norland
N.D.
+0.7
+0.2
-0.1
-0.5
carbon source
M9+glycerol
N.D.
+0.4
-0.5
-0.1
+0.5
carbon source
M9+glycerol
N.D.
+0.7
-1.0
+0.2
+0.6
carbon source
M9+glycerol
N.D.
+0.2
-0.3
+0.5
+0.1
carbon source
M9+glycerol
N.D.
+0.5
-0.4
+0.2
+0.5
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