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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS15785 and HGI48_RS15790 are separated by 777 nucleotides
HGI48_RS15790 and HGI48_RS15795 are separated by 348 nucleotides
HGI48_RS15795 and HGI48_RS15800 are separated by 27 nucleotides
HGI48_RS15800 and HGI48_RS15805 overlap by 1 nucleotides
HGI48_RS15785: HGI48_RS15785 - diguanylate cyclase, at 3,551,808 to 3,553,325
_RS15785
HGI48_RS15790: HGI48_RS15790 - cyclic-guanylate-specific phosphodiesterase, at 3,554,103 to 3,554,894
_RS15790
HGI48_RS15795: HGI48_RS15795 - YfhL family 4Fe-4S dicluster ferredoxin, at 3,555,243 to 3,555,503
_RS15795
HGI48_RS15800: HGI48_RS15800 - holo-ACP synthase, at 3,555,531 to 3,555,911
_RS15800
HGI48_RS15805: HGI48_RS15805 - pyridoxine 5'-phosphate synthase, at 3,555,911 to 3,556,642
_RS15805
Group
Condition
HGI48
_RS15785
HGI48
_RS15790
HGI48
_RS15795
HGI48
_RS15800
HGI48
_RS15805
plant
Norland
-0.2
+0.6
-0.4
-0.1
-1.9
plant
Norland
-0.1
+0.5
-0.3
+0.3
-2.2
control
PDB
-0.2
+0.5
-0.7
+0.5
-1.7
carbon source
M9+glycerol
-0.1
+0.9
-0.1
+0.1
-2.1
control
LB
-0.1
+0.3
-0.3
-0.4
-0.8
carbon source
M9+glycerol
+0.1
+1.0
+0.6
-1.0
-1.7
plant
Norland
-0.0
+0.5
-0.6
-1.0
+0.2
control
PDB
-0.4
+0.4
-0.1
+1.0
-1.6
plant
Norland
+0.2
+0.4
-0.7
-0.5
-0.2
control
LB
+0.0
+0.3
-0.5
+0.7
-1.2
plant
Upstate
-0.0
+0.3
-0.7
+0.3
-0.5
plant
Atlantic
+0.1
+0.4
+0.2
+1.1
-2.1
carbon source
M9+glycerol
+0.0
+1.4
-0.7
-0.6
-0.3
control
PDB
-0.2
+0.7
+0.1
+0.7
-1.6
control
PDB
-0.4
+0.5
-0.6
+1.2
-0.7
plant
Atlantic
-0.4
+0.6
-0.8
+1.1
-0.4
plant
Upstate
+0.2
+0.4
-0.7
+0.6
-0.2
plant
Upstate
+0.1
+0.4
-0.2
+1.4
-0.9
carbon source
M9+sucrose
+0.1
-0.4
-0.5
+1.7
-0.0
control
PDB
-0.2
+0.4
-0.2
+1.5
-0.5
plant
Norland
+0.1
+0.7
-0.3
-0.1
+0.9
carbon source
M9+glycerol
-0.0
+1.2
+0.1
+0.3
-0.1
carbon source
M9+polygalacturonate
-0.4
+1.0
-0.8
+1.7
-0.1
carbon source
M9+sucrose
-0.1
-0.2
-0.5
+1.5
+0.8
carbon source
M9+sucrose
-0.1
-0.3
-0.2
+1.8
+0.3
control
PDB
-0.0
+0.5
-0.2
+1.4
-0.0
carbon source
M9+polygalacturonate
-0.5
+0.8
+0.3
+1.2
-0.1
carbon source
M9+polygalacturonate
-0.4
+0.7
-0.3
+1.7
+0.0
carbon source
M9+glycerol
-0.1
+1.6
+0.2
+0.8
-0.6
carbon source
M9+glycerol
+0.1
+2.8
-0.5
+0.1
-0.6
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