Fitness for 5 genes in Dickeya dianthicola 67-19

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500 ntHGI48_RS15460 and HGI48_RS15465 are separated by 20 nucleotidesHGI48_RS15465 and HGI48_RS15470 are separated by 31 nucleotidesHGI48_RS15470 and HGI48_RS15475 overlap by 4 nucleotidesHGI48_RS15475 and HGI48_RS15480 overlap by 4 nucleotides HGI48_RS15460: HGI48_RS15460 - type II secretion system F family protein, at 3,478,944 to 3,480,149 _RS15460 HGI48_RS15465: HGI48_RS15465 - type II secretion system major pseudopilin GspG, at 3,480,170 to 3,480,589 _RS15465 HGI48_RS15470: HGI48_RS15470 - type II secretion system minor pseudopilin GspI, at 3,480,621 to 3,480,989 _RS15470 HGI48_RS15475: HGI48_RS15475 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 3,480,986 to 3,481,531 _RS15475 HGI48_RS15480: HGI48_RS15480 - general secretion pathway protein GspK, at 3,481,528 to 3,482,448 _RS15480
Group Condition HGI48_RS15460 HGI48_RS15465 HGI48_RS15470 HGI48_RS15475 HGI48_RS15480
plant Atlantic -0.1 -0.2 -0.3 -0.2 -0.6
plant Atlantic -0.4 +0.1 -0.2 -0.5 -0.2
plant Atlantic +0.1 +0.1 -1.1 -0.0 -0.2
carbon source M9+glycerol -0.2 +0.1 -0.9 +0.1 -0.2
plant Upstate +0.2 -0.1 -0.7 -0.1 -0.2
control LB -0.3 +0.1 -1.1 +0.3 +0.1
plant Upstate -0.0 -0.1 -1.1 +0.1 +0.2
carbon source M9+glycerol +0.2 -0.1 -1.0 -0.2 +0.1
plant Upstate -0.0 -0.1 -0.6 -0.1 +0.1
plant Norland -0.0 +0.0 -0.8 -0.2 +0.1
control LB -0.1 -0.1 -0.6 -0.2 +0.2
carbon source M9+glycerol -0.2 -0.2 -0.4 +0.0 +0.1
control PDB -0.0 -0.1 -0.8 +0.4 -0.1
carbon source M9+glycerol -0.1 -0.3 -0.4 +0.2 -0.1
control PDB -0.0 +0.2 -0.7 +0.1 -0.0
plant Norland +0.1 -0.2 -0.5 +0.2 +0.2
plant Norland -0.1 -0.2 -0.3 +0.0 +0.4
plant Norland +0.2 +0.3 -0.4 -0.2 +0.0
control PDB +0.2 +0.1 -0.5 +0.3 -0.1
plant Atlantic -0.4 +0.1 +0.1 -0.1 +0.2
control LB +0.1 +0.1 -0.5 +0.4 +0.1
plant Upstate -0.2 -0.0 +0.5 +0.2 -0.2
plant Norland +0.4 +0.0 +0.3 +0.0 -0.2
plant Atlantic +0.2 +0.2 +0.6 -0.2 -0.1
carbon source M9+polygalacturonate -0.2 +0.1 +0.6 +0.1 +0.4
carbon source M9+polygalacturonate -0.4 +0.0 +1.0 +0.4 -0.0
carbon source M9+polygalacturonate +0.0 +0.2 +1.0 +0.3 -0.1
carbon source M9+sucrose +0.3 +0.2 +1.0 +0.0 -0.0
carbon source M9+sucrose +0.2 +0.0 +1.4 -0.0 -0.1
carbon source M9+sucrose +0.0 +0.4 +1.1 +0.2 -0.0
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