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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS15440 and HGI48_RS15445 are separated by 554 nucleotides
HGI48_RS15445 and HGI48_RS15450 are separated by 15 nucleotides
HGI48_RS15450 and HGI48_RS15455 overlap by 1 nucleotides
HGI48_RS15455 and HGI48_RS15460 overlap by 8 nucleotides
HGI48_RS15440: HGI48_RS15440 - VOC family protein, at 3,473,914 to 3,474,327
_RS15440
HGI48_RS15445: HGI48_RS15445 - hypothetical protein, at 3,474,882 to 3,475,370
_RS15445
HGI48_RS15450: HGI48_RS15450 - type II secretion system secretin GspD, at 3,475,386 to 3,477,473
_RS15450
HGI48_RS15455: HGI48_RS15455 - Flp pilus assembly complex ATPase component TadA, at 3,477,473 to 3,478,951
_RS15455
HGI48_RS15460: HGI48_RS15460 - type II secretion system F family protein, at 3,478,944 to 3,480,149
_RS15460
Group
Condition
HGI48
_RS15440
HGI48
_RS15445
HGI48
_RS15450
HGI48
_RS15455
HGI48
_RS15460
plant
Upstate
+0.6
-2.0
-0.2
-0.1
-0.0
carbon source
M9+polygalacturonate
-0.2
-0.2
-0.1
-0.3
-0.4
plant
Atlantic
-0.4
-0.8
+0.1
+0.2
-0.1
control
PDB
+0.5
-1.0
-0.2
-0.1
-0.0
carbon source
M9+polygalacturonate
-0.3
-0.5
+0.1
+0.1
+0.0
control
PDB
-0.0
-0.8
+0.1
+0.2
-0.0
plant
Atlantic
-0.1
-0.1
-0.2
-0.3
+0.2
plant
Atlantic
-0.4
+0.6
-0.2
+0.0
-0.4
carbon source
M9+sucrose
-0.3
-0.2
+0.1
-0.1
+0.2
carbon source
M9+polygalacturonate
+0.3
-0.5
+0.2
-0.1
-0.2
carbon source
M9+glycerol
+0.5
-0.7
+0.1
+0.1
-0.2
carbon source
M9+sucrose
+0.3
-0.6
-0.0
+0.1
+0.3
control
PDB
+0.6
-0.6
-0.2
+0.2
+0.1
plant
Norland
+0.4
-0.4
-0.1
+0.1
+0.2
carbon source
M9+glycerol
-0.2
+0.4
-0.1
+0.1
-0.1
plant
Upstate
+0.1
-0.2
-0.1
+0.2
+0.1
carbon source
M9+glycerol
+0.3
+0.2
-0.1
-0.3
+0.2
control
PDB
+0.4
+0.3
-0.2
-0.1
+0.1
control
PDB
+0.6
+0.1
-0.3
+0.2
+0.0
plant
Upstate
+0.2
+0.6
+0.0
+0.1
-0.2
control
LB
+0.5
+0.4
-0.1
+0.0
-0.1
plant
Norland
+0.2
+0.5
-0.0
-0.0
+0.1
plant
Norland
+0.3
+0.4
-0.0
+0.0
+0.1
carbon source
M9+glycerol
+0.3
+0.5
-0.1
+0.1
+0.0
control
PDB
+0.7
+0.1
-0.1
-0.0
+0.2
control
LB
+0.2
+0.7
-0.0
-0.0
+0.1
plant
Atlantic
+0.3
+0.7
+0.0
-0.1
+0.1
plant
Norland
+0.6
+0.1
+0.0
-0.1
+0.4
plant
Upstate
+0.2
+0.8
+0.0
-0.1
+0.2
plant
Atlantic
+0.0
+1.4
+0.1
+0.1
-0.4
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