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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS15355 and HGI48_RS15360 are separated by 8 nucleotides
HGI48_RS15360 and HGI48_RS15365 are separated by 13 nucleotides
HGI48_RS15365 and HGI48_RS15370 are separated by 189 nucleotides
HGI48_RS15370 and HGI48_RS15375 are separated by 169 nucleotides
HGI48_RS15355: HGI48_RS15355 - multidrug transporter subunit MdtD, at 3,456,997 to 3,458,400
_RS15355
HGI48_RS15360: HGI48_RS15360 - two-component system sensor histidine kinase BaeS, at 3,458,409 to 3,459,767
_RS15360
HGI48_RS15365: HGI48_RS15365 - two-component system response regulator BaeR, at 3,459,781 to 3,460,512
_RS15365
HGI48_RS15370: HGI48_RS15370 - glutathione S-transferase family protein, at 3,460,702 to 3,461,664
_RS15370
HGI48_RS15375: HGI48_RS15375 - tRNA 5-hydroxyuridine modification protein YegQ, at 3,461,834 to 3,463,210
_RS15375
Group
Condition
HGI48
_RS15355
HGI48
_RS15360
HGI48
_RS15365
HGI48
_RS15370
HGI48
_RS15375
plant
Atlantic
-0.8
-0.7
+0.1
+0.3
-0.1
carbon source
M9+glycerol
-0.4
-0.3
-0.7
+0.3
-0.0
carbon source
M9+sucrose
+0.4
-1.0
-0.1
-0.1
+0.2
carbon source
M9+glycerol
+0.2
-0.5
-0.5
+0.4
-0.0
carbon source
M9+polygalacturonate
-0.0
-0.4
-0.2
+0.1
+0.0
plant
Atlantic
-0.5
+0.0
-0.2
+0.2
+0.0
carbon source
M9+sucrose
-0.0
-0.0
-0.5
-0.1
+0.3
plant
Upstate
-0.3
+0.3
-0.1
-0.0
-0.2
control
PDB
-0.1
+0.2
-0.4
+0.1
-0.0
control
PDB
-0.1
-0.2
-0.2
+0.3
+0.0
plant
Norland
-0.1
-0.3
+0.3
+0.3
-0.0
carbon source
M9+sucrose
-0.4
+0.3
+0.1
+0.0
+0.0
plant
Atlantic
+0.2
+0.2
-0.3
-0.1
+0.2
plant
Norland
-0.2
-0.0
+0.3
+0.2
-0.2
carbon source
M9+glycerol
-0.1
+0.4
+0.1
+0.0
-0.3
carbon source
M9+glycerol
+0.0
-0.3
+0.3
+0.3
-0.2
plant
Upstate
-0.3
+0.1
+0.3
+0.2
-0.1
control
LB
+0.0
+0.3
-0.1
+0.2
-0.1
plant
Atlantic
-0.2
-0.5
+1.1
-0.1
+0.0
control
PDB
+0.1
+0.0
+0.2
+0.3
-0.2
plant
Norland
-0.2
+0.2
+0.3
+0.2
-0.1
plant
Atlantic
-0.2
+0.0
+0.3
+0.2
+0.2
plant
Atlantic
+0.1
+0.3
+0.1
+0.2
-0.2
control
LB
-0.0
+0.5
+0.2
+0.2
-0.2
carbon source
M9+polygalacturonate
+0.6
-0.0
+0.1
-0.2
+0.3
carbon source
M9+glycerol
+0.4
-0.1
+0.3
+0.1
+0.0
control
PDB
-0.1
+0.1
+0.7
+0.2
+0.1
carbon source
M9+polygalacturonate
+0.3
+0.1
+0.5
+0.1
+0.2
control
PDB
+0.2
+0.3
+0.3
+0.4
+0.2
control
PDB
+0.2
+0.4
+0.5
+0.2
+0.1
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