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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS15210 and HGI48_RS15215 are separated by 17 nucleotides
HGI48_RS15215 and HGI48_RS15220 overlap by 4 nucleotides
HGI48_RS15220 and HGI48_RS15225 are separated by 222 nucleotides
HGI48_RS15225 and HGI48_RS15230 are separated by 4 nucleotides
HGI48_RS15210: HGI48_RS15210 - phosphate ABC transporter ATP-binding protein, at 3,422,876 to 3,423,691
_RS15210
HGI48_RS15215: HGI48_RS15215 - phosphate ABC transporter permease PstA, at 3,423,709 to 3,425,355
_RS15215
HGI48_RS15220: HGI48_RS15220 - ABC transporter permease subunit, at 3,425,352 to 3,427,508
_RS15220
HGI48_RS15225: HGI48_RS15225 - polyphosphate kinase 1, at 3,427,731 to 3,429,800
_RS15225
HGI48_RS15230: HGI48_RS15230 - exopolyphosphatase, at 3,429,805 to 3,431,334
_RS15230
Group
Condition
HGI48
_RS15210
HGI48
_RS15215
HGI48
_RS15220
HGI48
_RS15225
HGI48
_RS15230
carbon source
M9+polygalacturonate
-0.8
-0.7
-0.4
-2.8
+1.0
carbon source
M9+polygalacturonate
-0.4
-1.0
-0.6
-2.1
+1.3
carbon source
M9+polygalacturonate
-0.1
-0.7
-0.1
-2.6
+1.1
carbon source
M9+sucrose
-0.2
-0.6
-0.4
-1.6
+1.2
control
LB
-0.1
+0.1
-0.1
-0.7
-0.8
carbon source
M9+sucrose
-0.1
-0.7
-0.7
-1.4
+1.6
plant
Norland
-0.4
+0.1
+0.0
-0.4
-0.7
control
LB
+0.0
-0.1
-0.1
-0.7
-0.5
plant
Norland
-0.0
-0.0
-0.1
-0.4
-0.6
plant
Atlantic
-0.0
+0.4
-0.4
-0.9
-0.1
carbon source
M9+sucrose
-0.0
-0.3
-0.1
-1.6
+0.9
carbon source
M9+glycerol
-0.1
-0.2
-0.4
-0.1
-0.3
carbon source
M9+glycerol
-0.0
+0.0
-0.1
-1.0
+0.0
carbon source
M9+glycerol
-0.3
+0.3
+0.4
-1.3
+0.0
plant
Upstate
-0.4
-0.0
+0.1
-0.2
-0.3
plant
Atlantic
+0.1
+0.2
+0.0
-0.6
-0.5
plant
Upstate
+0.1
-0.2
-0.2
-0.0
-0.5
plant
Upstate
+0.3
-0.2
-0.1
-0.5
-0.3
carbon source
M9+glycerol
+0.0
+0.1
+0.0
-1.0
+0.2
plant
Upstate
-0.3
-0.2
-0.0
+0.4
-0.7
control
PDB
+0.5
+0.4
+0.1
-1.9
+0.4
carbon source
M9+glycerol
+0.0
-0.3
-0.1
-0.4
+0.2
control
PDB
+0.6
+0.7
+0.1
-2.3
+0.5
control
PDB
+0.2
+0.4
+0.2
-1.5
+0.3
plant
Atlantic
+0.4
-0.3
+0.2
+0.1
-0.8
control
PDB
+0.3
+0.4
+0.1
-1.2
+0.3
plant
Norland
+0.3
-0.2
+0.2
+0.2
-0.6
plant
Atlantic
-0.3
+0.2
-0.1
-0.1
+0.3
control
PDB
+0.3
+0.3
+0.4
-1.4
+0.4
control
PDB
+0.3
+0.4
+0.4
-1.6
+0.6
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