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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS15065 and HGI48_RS15070 are separated by 16 nucleotides
HGI48_RS15070 and HGI48_RS15075 are separated by 371 nucleotides
HGI48_RS15075 and HGI48_RS15080 are separated by 227 nucleotides
HGI48_RS15080 and HGI48_RS15085 are separated by 106 nucleotides
HGI48_RS15065: HGI48_RS15065 - D-galactonate dehydratase family protein, at 3,390,005 to 3,391,219
_RS15065
HGI48_RS15070: HGI48_RS15070 - Zn-dependent oxidoreductase, at 3,391,236 to 3,392,255
_RS15070
HGI48_RS15075: HGI48_RS15075 - MHS family MFS transporter, at 3,392,627 to 3,394,039
_RS15075
HGI48_RS15080: HGI48_RS15080 - GntR family transcriptional regulator, at 3,394,267 to 3,394,971
_RS15080
HGI48_RS15085: HGI48_RS15085 - urocanate hydratase, at 3,395,078 to 3,396,769
_RS15085
Group
Condition
HGI48
_RS15065
HGI48
_RS15070
HGI48
_RS15075
HGI48
_RS15080
HGI48
_RS15085
carbon source
M9+glycerol
-0.1
-0.1
-0.4
-0.4
+0.1
plant
Atlantic
-0.0
+0.1
-0.2
-0.7
-0.0
plant
Upstate
-0.1
-0.1
-0.2
-0.2
-0.1
control
PDB
-0.2
+0.1
-0.4
-0.3
+0.2
control
PDB
-0.0
+0.3
-0.4
-0.4
-0.1
control
PDB
-0.1
-0.0
-0.3
-0.3
+0.2
plant
Upstate
-0.5
+0.1
-0.2
-0.0
+0.1
control
PDB
-0.0
-0.0
-0.2
-0.4
+0.1
control
LB
+0.1
-0.1
-0.1
-0.3
+0.1
plant
Atlantic
-0.0
+0.4
-0.2
-0.7
+0.2
carbon source
M9+glycerol
+0.0
+0.2
-0.5
+0.1
-0.1
plant
Upstate
-0.1
+0.0
-0.3
-0.1
+0.2
plant
Norland
-0.1
+0.0
-0.1
-0.2
+0.2
carbon source
M9+glycerol
-0.3
+0.1
-0.1
+0.2
-0.2
plant
Atlantic
+0.0
+0.3
-0.3
+0.1
-0.4
control
LB
+0.1
+0.0
-0.1
-0.3
+0.1
carbon source
M9+glycerol
-0.2
+0.3
-0.2
+0.1
-0.1
plant
Atlantic
-0.1
+0.3
-0.2
-0.3
+0.2
plant
Norland
+0.2
+0.1
-0.0
-0.5
+0.2
carbon source
M9+polygalacturonate
+0.4
+0.1
-0.1
-0.4
+0.1
carbon source
M9+sucrose
+0.2
-0.1
-0.0
+0.2
-0.2
carbon source
M9+glycerol
+0.1
-0.0
-0.3
+0.1
+0.2
plant
Norland
+0.2
+0.1
+0.0
-0.3
+0.1
control
LB
+0.2
+0.2
-0.1
-0.1
+0.1
carbon source
M9+polygalacturonate
+0.3
+0.1
-0.2
+0.1
-0.0
control
PDB
+0.2
+0.2
-0.2
+0.1
-0.0
carbon source
M9+sucrose
+0.2
+0.0
-0.0
+0.4
+0.1
carbon source
M9+polygalacturonate
+0.1
+0.1
-0.1
+0.4
+0.2
plant
Norland
+0.2
+0.3
+0.1
+0.0
+0.1
plant
Atlantic
+0.2
-0.1
+0.4
-0.3
+0.6
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