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Cofit
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS15045 and HGI48_RS15050 are separated by 220 nucleotides
HGI48_RS15050 and HGI48_RS15055 are separated by 26 nucleotides
HGI48_RS15055 and HGI48_RS15060 are separated by 178 nucleotides
HGI48_RS15060 and HGI48_RS15065 are separated by 331 nucleotides
HGI48_RS15045: HGI48_RS15045 - pectate lyase, at 3,386,171 to 3,387,205
_RS15045
HGI48_RS15050: HGI48_RS15050 - GNAT family N-acetyltransferase, at 3,387,426 to 3,387,974
_RS15050
HGI48_RS15055: HGI48_RS15055 - cupin domain-containing protein, at 3,388,001 to 3,388,406
_RS15055
HGI48_RS15060: HGI48_RS15060 - iron-containing alcohol dehydrogenase family protein, at 3,388,585 to 3,389,673
_RS15060
HGI48_RS15065: HGI48_RS15065 - D-galactonate dehydratase family protein, at 3,390,005 to 3,391,219
_RS15065
Group
Condition
HGI48
_RS15045
HGI48
_RS15050
HGI48
_RS15055
HGI48
_RS15060
HGI48
_RS15065
carbon source
M9+glycerol
-0.3
-0.4
-0.3
+0.2
-0.2
carbon source
M9+glycerol
+0.2
+0.1
-0.3
-0.9
-0.1
plant
Atlantic
-0.7
+0.0
-0.4
-0.3
+0.2
plant
Norland
-0.4
-0.0
-0.4
-0.1
-0.1
plant
Upstate
-0.0
-0.3
-0.2
-0.0
-0.5
control
LB
-0.4
-0.3
-0.2
-0.2
+0.1
plant
Upstate
-0.3
-0.0
-0.4
+0.0
-0.1
plant
Norland
+0.1
-0.1
-0.3
-0.4
-0.1
control
PDB
-0.3
+0.0
-0.1
-0.1
-0.2
control
LB
+0.2
-0.3
-0.2
-0.2
-0.1
carbon source
M9+glycerol
+0.1
-0.3
-0.4
+0.3
-0.3
plant
Upstate
+0.2
-0.3
-0.2
-0.1
-0.1
carbon source
M9+glycerol
+0.3
-0.1
-0.4
-0.2
-0.1
plant
Norland
-0.2
-0.2
-0.1
-0.3
+0.2
plant
Atlantic
-0.1
-0.1
+0.1
-0.3
-0.0
plant
Atlantic
+0.3
+0.0
-0.3
-0.2
-0.1
plant
Norland
-0.3
+0.0
-0.2
-0.1
+0.2
plant
Atlantic
+0.1
-0.3
-0.4
+0.3
+0.0
control
LB
+0.1
-0.3
-0.1
-0.2
+0.2
plant
Norland
-0.1
+0.3
-0.2
-0.1
-0.0
control
PDB
+0.2
+0.0
-0.4
+0.1
-0.0
plant
Upstate
+0.2
+0.2
-0.4
+0.0
-0.1
control
PDB
-0.3
-0.0
-0.2
+0.4
+0.1
control
PDB
+0.2
+0.1
-0.0
-0.3
+0.2
carbon source
M9+polygalacturonate
+0.1
+0.1
-0.1
-0.2
+0.4
carbon source
M9+sucrose
+0.1
+0.0
-0.2
+0.1
+0.3
carbon source
M9+sucrose
-0.0
+0.2
-0.3
+0.2
+0.2
plant
Norland
+0.2
+0.3
-0.1
+0.0
+0.2
carbon source
M9+polygalacturonate
-0.3
+0.3
+0.1
+0.6
+0.1
carbon source
M9+sucrose
+0.2
+0.7
+0.1
-0.1
+0.2
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