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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS15035 and HGI48_RS15040 are separated by 470 nucleotides
HGI48_RS15040 and HGI48_RS15045 are separated by 571 nucleotides
HGI48_RS15045 and HGI48_RS15050 are separated by 220 nucleotides
HGI48_RS15050 and HGI48_RS15055 are separated by 26 nucleotides
HGI48_RS15035: HGI48_RS15035 - ABC transporter ATP-binding protein, at 3,383,726 to 3,384,835
_RS15035
HGI48_RS15040: HGI48_RS15040 - hypothetical protein, at 3,385,306 to 3,385,599
_RS15040
HGI48_RS15045: HGI48_RS15045 - pectate lyase, at 3,386,171 to 3,387,205
_RS15045
HGI48_RS15050: HGI48_RS15050 - GNAT family N-acetyltransferase, at 3,387,426 to 3,387,974
_RS15050
HGI48_RS15055: HGI48_RS15055 - cupin domain-containing protein, at 3,388,001 to 3,388,406
_RS15055
Group
Condition
HGI48
_RS15035
HGI48
_RS15040
HGI48
_RS15045
HGI48
_RS15050
HGI48
_RS15055
plant
Upstate
-0.3
N.D.
-0.3
-0.0
-0.4
plant
Atlantic
-0.1
N.D.
-0.7
+0.0
-0.4
carbon source
M9+glycerol
+0.1
N.D.
-0.3
-0.4
-0.3
plant
Atlantic
-0.3
N.D.
+0.1
-0.3
-0.4
plant
Norland
-0.1
N.D.
-0.4
-0.0
-0.4
control
LB
-0.0
N.D.
-0.4
-0.3
-0.2
plant
Upstate
-0.2
N.D.
-0.0
-0.3
-0.2
plant
Norland
-0.4
N.D.
-0.3
+0.0
-0.2
plant
Upstate
-0.4
N.D.
+0.0
-0.2
-0.2
plant
Norland
-0.3
N.D.
+0.1
-0.1
-0.3
plant
Norland
-0.2
N.D.
-0.2
-0.2
-0.1
plant
Upstate
-0.3
N.D.
+0.2
-0.3
-0.2
carbon source
M9+glycerol
-0.0
N.D.
+0.1
-0.3
-0.4
control
PDB
-0.1
N.D.
+0.0
-0.3
-0.1
control
PDB
+0.0
N.D.
-0.3
-0.0
-0.2
control
LB
-0.1
N.D.
+0.1
-0.3
-0.1
plant
Atlantic
-0.2
N.D.
-0.1
-0.1
+0.1
control
PDB
+0.1
N.D.
-0.3
+0.0
-0.1
plant
Atlantic
-0.2
N.D.
+0.3
+0.0
-0.3
control
LB
+0.1
N.D.
+0.2
-0.3
-0.2
plant
Upstate
-0.2
N.D.
+0.2
+0.2
-0.4
plant
Norland
-0.2
N.D.
-0.1
+0.3
-0.2
control
PDB
-0.3
N.D.
+0.2
+0.1
-0.0
carbon source
M9+glycerol
+0.1
N.D.
+0.2
+0.1
-0.3
carbon source
M9+glycerol
+0.3
N.D.
+0.3
-0.1
-0.4
control
PDB
+0.1
N.D.
+0.2
+0.0
-0.4
carbon source
M9+polygalacturonate
+0.1
N.D.
-0.3
+0.3
+0.1
carbon source
M9+sucrose
+0.4
N.D.
-0.0
+0.2
-0.3
plant
Norland
-0.1
N.D.
+0.2
+0.3
-0.1
carbon source
M9+sucrose
+0.4
N.D.
+0.2
+0.7
+0.1
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