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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS15005 and HGI48_RS15010 are separated by 110 nucleotides
HGI48_RS15010 and HGI48_RS15015 are separated by 133 nucleotides
HGI48_RS15015 and HGI48_RS15020 are separated by 5 nucleotides
HGI48_RS15020 and HGI48_RS15025 are separated by 103 nucleotides
HGI48_RS15005: HGI48_RS15005 - PTS transporter subunit EIIB, at 3,375,985 to 3,376,299
_RS15005
HGI48_RS15010: HGI48_RS15010 - beta-galactosidase, at 3,376,410 to 3,378,467
_RS15010
HGI48_RS15015: HGI48_RS15015 - glycosyl hydrolase 53 family protein, at 3,378,601 to 3,379,800
_RS15015
HGI48_RS15020: HGI48_RS15020 - ABC transporter permease subunit, at 3,379,806 to 3,380,639
_RS15020
HGI48_RS15025: HGI48_RS15025 - sugar ABC transporter permease, at 3,380,743 to 3,382,050
_RS15025
Group
Condition
HGI48
_RS15005
HGI48
_RS15010
HGI48
_RS15015
HGI48
_RS15020
HGI48
_RS15025
plant
Atlantic
-0.2
-1.4
-1.1
-0.2
-0.8
plant
Atlantic
-0.2
-1.4
-0.6
-0.6
-0.6
plant
Atlantic
-0.1
-1.2
-0.7
-0.7
-0.2
plant
Norland
-0.0
-1.3
-0.5
-0.4
-0.3
plant
Atlantic
+0.6
-1.2
-0.8
-0.6
-0.4
plant
Upstate
-0.5
-1.0
-0.4
-0.1
-0.3
plant
Norland
-0.2
-1.1
-0.4
+0.0
-0.5
plant
Upstate
+0.0
-1.3
-0.5
-0.3
-0.2
plant
Norland
-0.3
-0.9
-0.3
-0.4
-0.2
plant
Atlantic
-0.1
-1.0
-0.6
-0.3
-0.1
plant
Norland
+0.0
-0.7
-0.5
-0.3
-0.2
plant
Upstate
+0.4
-1.0
-0.5
-0.2
-0.4
plant
Upstate
-0.1
-0.8
-0.2
-0.3
-0.0
plant
Norland
+0.4
-0.9
-0.3
-0.2
-0.4
plant
Upstate
+0.1
-0.9
-0.2
-0.2
-0.1
carbon source
M9+glycerol
-0.4
-0.1
+0.2
-0.6
-0.3
plant
Norland
+0.4
-0.8
-0.2
-0.2
-0.3
carbon source
M9+glycerol
-0.2
-0.2
-0.2
-0.3
-0.2
control
PDB
-0.3
-0.1
-0.0
-0.2
-0.3
control
PDB
-0.4
+0.0
-0.1
-0.3
-0.2
control
LB
-0.1
-0.2
-0.0
-0.2
-0.2
control
PDB
-0.1
-0.1
-0.2
-0.0
-0.3
control
PDB
-0.2
-0.0
+0.1
-0.1
-0.3
plant
Atlantic
+0.4
-1.1
-0.4
+0.5
-0.0
carbon source
M9+polygalacturonate
-0.1
+0.4
-0.4
-0.3
+0.0
carbon source
M9+polygalacturonate
-0.2
+0.2
-0.2
-0.2
-0.0
carbon source
M9+sucrose
-0.3
+0.3
+0.1
-0.1
-0.2
carbon source
M9+polygalacturonate
+0.4
+0.0
+0.0
-0.4
+0.0
carbon source
M9+sucrose
+0.3
-0.1
+0.0
-0.2
+0.2
control
LB
+0.5
-0.1
+0.1
-0.1
-0.1
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