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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS14980 and HGI48_RS14985 are separated by 570 nucleotides
HGI48_RS14985 and HGI48_RS14990 are separated by 276 nucleotides
HGI48_RS14990 and HGI48_RS14995 are separated by 169 nucleotides
HGI48_RS14995 and HGI48_RS15000 are separated by 267 nucleotides
HGI48_RS14980: HGI48_RS14980 - hypothetical protein, at 3,370,549 to 3,370,875
_RS14980
HGI48_RS14985: HGI48_RS14985 - cupin domain-containing protein, at 3,371,446 to 3,372,567
_RS14985
HGI48_RS14990: HGI48_RS14990 - YjfB family protein, at 3,372,844 to 3,373,032
_RS14990
HGI48_RS14995: HGI48_RS14995 - LacI family DNA-binding transcriptional regulator, at 3,373,202 to 3,374,275
_RS14995
HGI48_RS15000: HGI48_RS15000 - maltoporin, at 3,374,543 to 3,375,814
_RS15000
Group
Condition
HGI48
_RS14980
HGI48
_RS14985
HGI48
_RS14990
HGI48
_RS14995
HGI48
_RS15000
control
PDB
-0.6
-0.2
-0.6
-0.1
-0.1
carbon source
M9+polygalacturonate
+0.2
+0.3
-1.6
-0.4
+0.0
plant
Atlantic
-0.1
-0.3
-0.4
-0.0
-0.4
carbon source
M9+sucrose
-0.1
+0.2
-1.0
-0.5
+0.1
plant
Atlantic
-0.3
-0.5
-0.9
+0.6
+0.1
carbon source
M9+glycerol
-0.1
-0.4
-0.1
+0.1
-0.3
control
PDB
-0.4
+0.2
-0.2
+0.3
-0.3
carbon source
M9+glycerol
-0.3
-0.3
-0.2
+0.4
-0.0
control
LB
-0.2
+0.1
-0.1
-0.3
+0.2
plant
Norland
-0.3
-0.0
-0.5
+0.7
-0.0
carbon source
M9+polygalacturonate
+0.2
-0.1
-0.4
+0.2
-0.0
plant
Norland
+0.2
+0.1
-0.7
+0.3
-0.1
carbon source
M9+polygalacturonate
+0.3
+0.3
-0.2
-0.2
-0.3
control
LB
-0.2
+0.0
+0.4
+0.1
-0.2
control
PDB
-0.2
-0.2
+0.5
-0.2
+0.2
control
LB
-0.3
-0.0
+0.1
+0.3
+0.1
plant
Upstate
+0.2
-0.2
+0.1
+0.4
-0.1
plant
Upstate
-0.3
-0.1
+0.4
+0.4
-0.1
control
PDB
-0.1
+0.1
+0.7
-0.3
-0.0
plant
Upstate
-0.1
+0.2
+0.0
+0.5
-0.2
plant
Atlantic
-0.0
+0.0
-0.3
+0.7
+0.0
carbon source
M9+glycerol
-0.1
-0.0
+0.7
-0.0
-0.0
plant
Atlantic
+0.2
+0.1
-0.1
+0.6
-0.3
carbon source
M9+glycerol
-0.1
+0.3
+0.4
+0.2
-0.1
plant
Norland
-0.1
-0.0
-0.2
+0.9
+0.1
carbon source
M9+sucrose
+0.1
+0.1
+0.7
+0.3
-0.1
plant
Norland
+0.1
+0.1
+0.6
+0.3
-0.0
plant
Norland
-0.5
-0.0
+1.0
+0.6
+0.0
plant
Norland
-0.0
+0.1
+0.3
+0.9
-0.1
plant
Atlantic
+0.3
+0.3
+0.7
-0.1
+0.6
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