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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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500 nt
HGI48_RS14880 and HGI48_RS14885 are separated by 71 nucleotides
HGI48_RS14885 and HGI48_RS14890 are separated by 5 nucleotides
HGI48_RS14890 and HGI48_RS14895 are separated by 40 nucleotides
HGI48_RS14895 and HGI48_RS14900 overlap by 4 nucleotides
HGI48_RS14880: HGI48_RS14880 - transposase, at 3,356,473 to 3,356,706
_RS14880
HGI48_RS14885: HGI48_RS14885 - hypothetical protein, at 3,356,778 to 3,356,978
_RS14885
HGI48_RS14890: HGI48_RS14890 - sulfatase-like hydrolase/transferase, at 3,356,984 to 3,357,427
_RS14890
HGI48_RS14895: HGI48_RS14895 - AAA family ATPase, at 3,357,468 to 3,358,250
_RS14895
HGI48_RS14900: HGI48_RS14900 - IS21 family transposase, at 3,358,247 to 3,359,272
_RS14900
Group
Condition
HGI48
_RS14880
HGI48
_RS14885
HGI48
_RS14890
HGI48
_RS14895
HGI48
_RS14900
control
PDB
-0.2
-0.2
-0.2
N.D.
N.D.
control
PDB
-0.3
-0.0
-0.2
N.D.
N.D.
control
PDB
-0.3
-0.3
+0.2
N.D.
N.D.
control
PDB
-0.2
-0.1
+0.0
N.D.
N.D.
plant
Atlantic
-0.6
+0.1
+0.2
N.D.
N.D.
plant
Atlantic
-0.4
+0.1
+0.1
N.D.
N.D.
plant
Norland
-0.3
+0.0
+0.1
N.D.
N.D.
plant
Upstate
+0.0
+0.3
-0.4
N.D.
N.D.
plant
Upstate
-0.2
-0.1
+0.2
N.D.
N.D.
carbon source
M9+polygalacturonate
+0.2
-0.2
+0.0
N.D.
N.D.
control
PDB
+0.2
-0.1
-0.1
N.D.
N.D.
carbon source
M9+glycerol
-0.1
-0.0
+0.2
N.D.
N.D.
plant
Atlantic
+0.2
+0.1
-0.2
N.D.
N.D.
carbon source
M9+sucrose
-0.1
+0.2
+0.1
N.D.
N.D.
plant
Upstate
-0.3
+0.1
+0.4
N.D.
N.D.
control
LB
-0.0
-0.0
+0.3
N.D.
N.D.
carbon source
M9+polygalacturonate
+0.0
-0.0
+0.2
N.D.
N.D.
carbon source
M9+polygalacturonate
-0.2
-0.1
+0.5
N.D.
N.D.
control
LB
+0.2
+0.0
+0.1
N.D.
N.D.
carbon source
M9+glycerol
+0.2
-0.0
+0.2
N.D.
N.D.
plant
Atlantic
-0.0
-0.1
+0.5
N.D.
N.D.
carbon source
M9+glycerol
-0.1
+0.1
+0.4
N.D.
N.D.
carbon source
M9+glycerol
+0.2
+0.0
+0.1
N.D.
N.D.
plant
Norland
-0.2
+0.1
+0.5
N.D.
N.D.
plant
Norland
-0.1
+0.3
+0.2
N.D.
N.D.
plant
Norland
+0.0
+0.2
+0.2
N.D.
N.D.
plant
Norland
-0.1
+0.2
+0.3
N.D.
N.D.
carbon source
M9+glycerol
-0.2
+0.2
+0.4
N.D.
N.D.
plant
Atlantic
+0.6
+0.1
-0.0
N.D.
N.D.
plant
Atlantic
+0.2
+0.1
+0.5
N.D.
N.D.
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