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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS14815 and HGI48_RS14820 are separated by 374 nucleotides
HGI48_RS14820 and HGI48_RS14825 are separated by 133 nucleotides
HGI48_RS14825 and HGI48_RS14830 are separated by 131 nucleotides
HGI48_RS14830 and HGI48_RS14835 overlap by 4 nucleotides
HGI48_RS14815: HGI48_RS14815 - helix-turn-helix transcriptional regulator, at 3,335,721 to 3,336,020
_RS14815
HGI48_RS14820: HGI48_RS14820 - IS630 family transposase, at 3,336,395 to 3,337,426
_RS14820
HGI48_RS14825: HGI48_RS14825 - GNAT family N-acetyltransferase, at 3,337,560 to 3,338,018
_RS14825
HGI48_RS14830: HGI48_RS14830 - DEAD/DEAH box helicase, at 3,338,150 to 3,343,654
_RS14830
HGI48_RS14835: HGI48_RS14835 - hypothetical protein, at 3,343,651 to 3,344,694
_RS14835
Group
Condition
HGI48
_RS14815
HGI48
_RS14820
HGI48
_RS14825
HGI48
_RS14830
HGI48
_RS14835
carbon source
M9+polygalacturonate
-0.4
+0.1
-0.2
+0.0
-0.0
control
PDB
-0.5
+0.3
-0.2
-0.1
-0.0
carbon source
M9+sucrose
+0.1
-0.2
-0.3
+0.0
-0.1
control
PDB
-0.2
+0.2
+0.1
-0.0
-0.2
control
PDB
-0.1
+0.2
+0.0
-0.1
-0.1
carbon source
M9+polygalacturonate
-0.2
+0.2
+0.2
+0.0
-0.1
control
LB
-0.2
+0.1
-0.1
+0.1
+0.1
control
LB
-0.2
+0.2
+0.1
+0.0
+0.0
plant
Upstate
-0.1
+0.3
+0.0
+0.1
-0.1
plant
Norland
-0.4
+0.1
+0.3
+0.1
-0.0
plant
Norland
+0.2
+0.0
-0.3
+0.1
+0.2
control
PDB
+0.1
+0.1
-0.2
-0.0
+0.2
plant
Norland
-0.2
+0.1
+0.1
+0.1
+0.1
plant
Atlantic
+0.2
+0.3
-0.3
+0.1
-0.0
plant
Atlantic
+0.1
+0.1
+0.3
+0.1
-0.4
plant
Norland
-0.3
+0.3
+0.1
+0.1
+0.1
plant
Atlantic
-0.1
+0.1
+0.3
+0.2
-0.0
plant
Upstate
-0.1
+0.4
+0.0
+0.1
+0.1
plant
Upstate
-0.0
+0.2
+0.1
+0.1
+0.2
plant
Upstate
+0.3
+0.0
+0.3
+0.1
-0.1
carbon source
M9+glycerol
+0.0
-0.0
+0.3
+0.1
+0.2
carbon source
M9+glycerol
-0.3
+0.3
+0.4
+0.1
+0.1
carbon source
M9+polygalacturonate
-0.1
+0.2
+0.3
+0.0
+0.2
plant
Upstate
-0.0
+0.5
+0.2
+0.2
-0.1
plant
Atlantic
+0.3
+0.3
+0.2
+0.1
-0.0
plant
Norland
-0.1
+0.3
+0.5
+0.0
+0.2
carbon source
M9+glycerol
+0.0
+0.2
+0.3
+0.2
+0.2
carbon source
M9+glycerol
+0.1
+0.1
+0.5
+0.0
+0.2
carbon source
M9+glycerol
+0.1
+0.2
+0.6
+0.1
+0.1
plant
Atlantic
+0.3
-0.1
+0.4
+0.1
+0.4
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