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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS14740 and HGI48_RS14745 are separated by 1147 nucleotides
HGI48_RS14745 and HGI48_RS14750 are separated by 33 nucleotides
HGI48_RS14750 and HGI48_RS14755 are separated by 155 nucleotides
HGI48_RS14755 and HGI48_RS14760 are separated by 415 nucleotides
HGI48_RS14740: HGI48_RS14740 - type II secretion system protein GspC, at 3,317,237 to 3,318,055
_RS14740
HGI48_RS14745: HGI48_RS14745 - type II secretion system assembly factor GspB, at 3,319,203 to 3,319,820
_RS14745
HGI48_RS14750: HGI48_RS14750 - GspS family T2SS pilot lipoprotein variant OutS, at 3,319,854 to 3,320,255
_RS14750
HGI48_RS14755: HGI48_RS14755 - alanine transaminase, at 3,320,411 to 3,321,652
_RS14755
HGI48_RS14760: HGI48_RS14760 - D-amino-acid transaminase, at 3,322,068 to 3,322,928
_RS14760
Group
Condition
HGI48
_RS14740
HGI48
_RS14745
HGI48
_RS14750
HGI48
_RS14755
HGI48
_RS14760
plant
Atlantic
-0.1
-0.1
-0.9
-0.2
-0.1
plant
Atlantic
-0.1
-0.1
-0.4
-0.1
-0.4
control
PDB
-0.3
-0.1
-0.5
-0.1
-0.1
plant
Atlantic
-0.1
-0.4
+0.1
-0.0
-0.5
plant
Atlantic
-0.3
-0.2
-0.2
+0.1
-0.3
carbon source
M9+sucrose
-0.4
-0.4
+0.0
-0.0
+0.0
plant
Atlantic
-0.3
-0.3
+0.1
-0.1
-0.1
carbon source
M9+polygalacturonate
-0.0
-0.6
-0.2
+0.1
+0.0
carbon source
M9+glycerol
-0.3
-0.5
+0.2
-0.1
-0.0
carbon source
M9+sucrose
-0.0
-0.3
-0.3
-0.0
-0.0
plant
Norland
-0.3
-0.0
-0.1
-0.3
+0.0
carbon source
M9+glycerol
+0.2
-0.2
-0.2
-0.6
+0.2
control
PDB
-0.0
+0.1
-0.3
-0.4
-0.1
plant
Norland
-0.3
-0.3
+0.4
+0.0
-0.4
plant
Norland
+0.1
-0.2
+0.0
-0.3
-0.1
carbon source
M9+glycerol
-0.5
-0.1
+0.3
-0.4
+0.3
carbon source
M9+glycerol
-0.4
+0.0
-0.1
-0.0
+0.2
control
PDB
-0.3
+0.5
-0.2
-0.2
-0.1
plant
Upstate
-0.3
-0.3
+0.1
+0.2
+0.0
carbon source
M9+glycerol
-0.3
+0.1
+0.2
-0.1
-0.2
control
LB
-0.2
+0.0
+0.2
-0.2
-0.0
plant
Norland
-0.0
+0.1
-0.1
+0.2
-0.3
control
LB
-0.2
-0.3
+0.2
+0.2
-0.0
carbon source
M9+polygalacturonate
-0.1
-0.1
+0.1
+0.3
-0.1
plant
Atlantic
-0.1
-0.3
+0.4
+0.1
-0.2
plant
Upstate
+0.0
-0.1
+0.2
-0.3
+0.2
control
LB
-0.2
+0.1
+0.3
-0.1
-0.1
carbon source
M9+polygalacturonate
-0.4
-0.4
+0.5
+0.3
+0.3
plant
Upstate
-0.2
+0.2
+0.3
-0.1
+0.1
plant
Norland
+0.1
+0.4
+0.1
+0.0
-0.0
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