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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS14455 and HGI48_RS14460 are separated by 216 nucleotides
HGI48_RS14460 and HGI48_RS14465 are separated by 14 nucleotides
HGI48_RS14465 and HGI48_RS14470 are separated by 15 nucleotides
HGI48_RS14470 and HGI48_RS14475 are separated by 301 nucleotides
HGI48_RS14455: HGI48_RS14455 - transcriptional regulator TctD, at 3,245,444 to 3,246,118
_RS14455
HGI48_RS14460: HGI48_RS14460 - tripartite tricarboxylate transporter substrate binding protein, at 3,246,335 to 3,247,312
_RS14460
HGI48_RS14465: HGI48_RS14465 - tripartite tricarboxylate transporter TctB family protein, at 3,247,327 to 3,247,755
_RS14465
HGI48_RS14470: HGI48_RS14470 - tripartite tricarboxylate transporter permease, at 3,247,771 to 3,249,285
_RS14470
HGI48_RS14475: HGI48_RS14475 - flagella biosynthesis regulator Flk, at 3,249,587 to 3,250,843
_RS14475
Group
Condition
HGI48
_RS14455
HGI48
_RS14460
HGI48
_RS14465
HGI48
_RS14470
HGI48
_RS14475
plant
Atlantic
-0.0
+0.3
-1.5
-0.6
-0.2
plant
Upstate
-0.2
+0.0
-0.8
-0.2
-0.2
plant
Norland
-0.3
-0.2
-0.4
-0.2
-0.1
carbon source
M9+sucrose
-0.2
-0.2
-0.3
-0.2
-0.2
carbon source
M9+glycerol
-0.0
+0.1
-0.6
-0.1
-0.3
control
PDB
+0.2
-0.2
-1.0
-0.1
+0.2
control
LB
-0.2
+0.2
-0.4
-0.2
-0.2
carbon source
M9+glycerol
-0.4
+0.1
+0.0
-0.1
-0.4
carbon source
M9+sucrose
-0.4
+0.2
-0.4
+0.0
-0.1
control
PDB
-0.2
+0.2
-0.3
-0.1
-0.3
control
LB
-0.1
+0.1
-0.1
-0.1
-0.2
carbon source
M9+polygalacturonate
-0.2
+0.4
-0.6
+0.0
-0.0
plant
Atlantic
-0.3
+0.3
-0.8
+0.1
+0.3
control
PDB
-0.0
+0.2
+0.1
-0.1
-0.5
plant
Upstate
+0.1
+0.1
-0.4
+0.3
-0.2
plant
Upstate
+0.0
+0.2
-0.2
-0.0
-0.2
carbon source
M9+glycerol
+0.0
+0.3
-0.5
-0.0
+0.1
control
LB
-0.1
-0.1
-0.1
-0.1
+0.3
plant
Atlantic
-0.0
+0.2
-0.2
-0.1
+0.1
plant
Norland
-0.1
+0.1
+0.0
-0.3
+0.3
plant
Atlantic
+0.6
-0.3
+0.3
-0.5
-0.0
control
PDB
+0.1
-0.0
-0.1
-0.3
+0.3
plant
Norland
+0.2
+0.0
-0.5
+0.0
+0.3
control
PDB
+0.3
+0.2
+0.2
-0.2
-0.2
carbon source
M9+polygalacturonate
+0.2
+0.5
-0.3
-0.0
+0.0
carbon source
M9+polygalacturonate
+0.3
+0.2
-0.1
+0.1
-0.2
plant
Atlantic
+0.2
-0.2
+0.1
-0.0
+0.3
plant
Norland
-0.2
+0.4
+0.2
+0.0
+0.2
carbon source
M9+sucrose
+0.0
+0.2
+0.2
+0.1
+0.2
plant
Atlantic
+0.3
+0.2
+0.2
+0.0
+0.3
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