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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS14015 and HGI48_RS14020 are separated by 733 nucleotides
HGI48_RS14020 and HGI48_RS14025 are separated by 205 nucleotides
HGI48_RS14025 and HGI48_RS14030 overlap by 7 nucleotides
HGI48_RS14030 and HGI48_RS14035 are separated by 491 nucleotides
HGI48_RS14015: HGI48_RS14015 - TetR/AcrR family transcriptional regulator, at 3,134,754 to 3,135,314
_RS14015
HGI48_RS14020: HGI48_RS14020 - glycosyltransferase, at 3,136,048 to 3,137,325
_RS14020
HGI48_RS14025: HGI48_RS14025 - gamma-glutamyltransferase, at 3,137,531 to 3,139,294
_RS14025
HGI48_RS14030: HGI48_RS14030 - MCP four helix bundle domain-containing protein, at 3,139,288 to 3,140,886
_RS14030
HGI48_RS14035: HGI48_RS14035 - LD-carboxypeptidase, at 3,141,378 to 3,141,677
_RS14035
Group
Condition
HGI48
_RS14015
HGI48
_RS14020
HGI48
_RS14025
HGI48
_RS14030
HGI48
_RS14035
plant
Atlantic
-0.0
+0.1
-0.2
-0.0
-2.9
plant
Norland
-0.4
+0.4
-0.0
-0.0
-2.5
plant
Norland
-0.1
+0.4
-0.1
-0.2
-2.1
control
LB
-0.0
-0.1
-0.1
-0.1
-1.6
control
PDB
-0.4
-0.1
+0.1
-0.2
-1.2
carbon source
M9+polygalacturonate
-0.0
-0.0
-0.1
-0.2
-1.2
plant
Atlantic
+0.1
+0.0
+0.1
-0.0
-1.8
carbon source
M9+glycerol
-0.1
+0.1
-0.1
-0.4
-1.1
plant
Upstate
-0.1
+0.2
-0.0
-0.2
-1.3
carbon source
M9+glycerol
+0.1
+0.3
+0.0
-0.2
-1.6
plant
Norland
-0.1
+0.2
-0.2
+0.0
-1.1
control
PDB
-0.1
-0.0
+0.1
-0.1
-1.1
plant
Norland
-0.1
+0.4
+0.0
-0.2
-1.3
carbon source
M9+glycerol
+0.1
+0.2
+0.2
-0.1
-1.4
plant
Upstate
+0.0
+0.3
-0.2
-0.1
-0.9
plant
Atlantic
-0.2
+0.3
-0.2
-0.2
-0.6
carbon source
M9+glycerol
-0.1
+0.2
-0.1
+0.1
-0.9
carbon source
M9+glycerol
-0.0
+0.1
+0.0
-0.2
-0.7
plant
Upstate
+0.1
+0.3
+0.1
-0.1
-1.2
plant
Atlantic
-0.4
+0.3
-0.0
+0.1
-0.7
control
PDB
-0.3
+0.3
+0.1
-0.1
-0.6
control
PDB
-0.4
-0.0
+0.1
+0.1
-0.3
control
LB
-0.1
+0.1
-0.0
+0.2
-0.7
control
LB
-0.2
+0.3
-0.1
+0.0
-0.4
plant
Norland
-0.3
+0.3
-0.1
-0.1
-0.2
plant
Norland
+0.1
+0.4
-0.1
+0.1
-0.7
plant
Upstate
+0.0
+0.4
+0.0
-0.1
+0.3
carbon source
M9+sucrose
-0.1
-0.1
+0.0
+0.2
+0.9
carbon source
M9+sucrose
+0.1
+0.3
+0.1
-0.0
+0.5
carbon source
M9+polygalacturonate
-0.3
-0.2
-0.0
+0.3
+1.2
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