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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS14000 and HGI48_RS14005 are separated by 56 nucleotides
HGI48_RS14005 and HGI48_RS14010 are separated by 74 nucleotides
HGI48_RS14010 and HGI48_RS14015 are separated by 138 nucleotides
HGI48_RS14015 and HGI48_RS14020 are separated by 733 nucleotides
HGI48_RS14000: HGI48_RS14000 - NADP-dependent oxidoreductase, at 3,131,591 to 3,132,610
_RS14000
HGI48_RS14005: HGI48_RS14005 - SDR family oxidoreductase, at 3,132,667 to 3,133,449
_RS14005
HGI48_RS14010: HGI48_RS14010 - alkene reductase, at 3,133,524 to 3,134,615
_RS14010
HGI48_RS14015: HGI48_RS14015 - TetR/AcrR family transcriptional regulator, at 3,134,754 to 3,135,314
_RS14015
HGI48_RS14020: HGI48_RS14020 - glycosyltransferase, at 3,136,048 to 3,137,325
_RS14020
Group
Condition
HGI48
_RS14000
HGI48
_RS14005
HGI48
_RS14010
HGI48
_RS14015
HGI48
_RS14020
carbon source
M9+polygalacturonate
-0.5
-0.2
-0.1
-0.3
-0.2
carbon source
M9+polygalacturonate
-0.7
-0.0
+0.0
-0.1
-0.1
plant
Atlantic
+0.0
-0.3
-0.0
-0.4
+0.3
carbon source
M9+polygalacturonate
-0.3
-0.2
+0.2
-0.0
-0.0
control
LB
+0.2
-0.1
-0.2
-0.2
-0.0
plant
Atlantic
+0.1
-0.3
-0.1
-0.0
+0.1
control
PDB
+0.2
-0.0
+0.0
-0.4
-0.1
plant
Atlantic
+0.2
-0.2
-0.3
-0.2
+0.3
carbon source
M9+glycerol
+0.1
-0.3
-0.0
-0.1
+0.2
plant
Norland
+0.2
-0.4
-0.2
-0.1
+0.4
control
PDB
+0.1
+0.2
-0.1
+0.0
-0.3
plant
Norland
+0.4
-0.2
-0.3
-0.1
+0.2
control
LB
+0.3
-0.2
-0.0
-0.1
+0.1
plant
Atlantic
+0.5
-0.1
-0.2
-0.3
+0.1
carbon source
M9+sucrose
+0.3
+0.2
-0.2
-0.1
-0.1
plant
Upstate
+0.1
-0.2
-0.1
+0.1
+0.3
control
LB
+0.1
+0.1
-0.1
-0.2
+0.3
control
PDB
+0.0
+0.2
+0.1
-0.2
+0.1
plant
Norland
+0.1
+0.1
+0.1
-0.4
+0.4
carbon source
M9+sucrose
-0.2
+0.0
+0.1
+0.1
+0.3
control
PDB
+0.1
+0.1
+0.1
-0.3
+0.3
plant
Upstate
+0.2
-0.1
-0.1
+0.0
+0.3
plant
Upstate
+0.2
+0.1
-0.1
-0.1
+0.2
plant
Norland
+0.2
-0.2
+0.1
-0.1
+0.4
plant
Norland
+0.4
+0.0
-0.1
-0.3
+0.3
plant
Atlantic
+0.2
+0.1
-0.0
-0.1
+0.4
plant
Norland
+0.2
-0.1
-0.0
+0.1
+0.4
plant
Upstate
+0.3
-0.1
-0.0
+0.0
+0.4
carbon source
M9+glycerol
+0.3
-0.1
+0.1
+0.1
+0.2
carbon source
M9+glycerol
+0.5
-0.0
+0.1
+0.1
+0.3
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