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Cofit
Fitness for 5 genes in
Dickeya dianthicola 67-19
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500 nt
HGI48_RS13985 and HGI48_RS13990 are separated by 36 nucleotides
HGI48_RS13990 and HGI48_RS13995 are separated by 120 nucleotides
HGI48_RS13995 and HGI48_RS14000 are separated by 244 nucleotides
HGI48_RS14000 and HGI48_RS14005 are separated by 56 nucleotides
HGI48_RS13985: HGI48_RS13985 - hypothetical protein, at 3,128,665 to 3,130,557
_RS13985
HGI48_RS13990: HGI48_RS13990 - DNA mismatch endonuclease Vsr, at 3,130,594 to 3,131,031
_RS13990
HGI48_RS13995: HGI48_RS13995 - integrase, at 3,131,152 to 3,131,346
_RS13995
HGI48_RS14000: HGI48_RS14000 - NADP-dependent oxidoreductase, at 3,131,591 to 3,132,610
_RS14000
HGI48_RS14005: HGI48_RS14005 - SDR family oxidoreductase, at 3,132,667 to 3,133,449
_RS14005
Group
Condition
HGI48
_RS13985
HGI48
_RS13990
HGI48
_RS13995
HGI48
_RS14000
HGI48
_RS14005
carbon source
M9+polygalacturonate
-0.0
-0.2
N.D.
-0.5
-0.2
carbon source
M9+polygalacturonate
-0.1
-0.1
N.D.
-0.7
-0.0
carbon source
M9+polygalacturonate
+0.0
-0.2
N.D.
-0.3
-0.2
carbon source
M9+sucrose
+0.1
-0.1
N.D.
-0.2
+0.0
control
PDB
-0.0
-0.3
N.D.
+0.2
-0.0
control
PDB
-0.2
-0.0
N.D.
+0.1
-0.1
plant
Atlantic
+0.1
-0.0
N.D.
+0.1
-0.3
plant
Atlantic
+0.1
+0.1
N.D.
+0.0
-0.3
carbon source
M9+glycerol
+0.0
-0.2
N.D.
+0.2
-0.1
plant
Atlantic
+0.2
-0.0
N.D.
+0.1
-0.3
plant
Norland
+0.0
+0.2
N.D.
+0.2
-0.4
carbon source
M9+glycerol
+0.0
+0.2
N.D.
+0.1
-0.3
plant
Atlantic
+0.1
+0.1
N.D.
+0.2
-0.2
control
LB
+0.1
-0.0
N.D.
+0.3
-0.2
carbon source
M9+glycerol
+0.3
-0.2
N.D.
+0.2
-0.0
carbon source
M9+glycerol
-0.1
+0.0
N.D.
+0.3
-0.1
control
PDB
-0.2
+0.1
N.D.
+0.1
+0.2
control
LB
+0.1
+0.2
N.D.
+0.2
-0.3
plant
Norland
-0.0
+0.1
N.D.
+0.4
-0.2
plant
Upstate
+0.0
+0.1
N.D.
+0.2
-0.1
plant
Norland
+0.0
+0.3
N.D.
+0.2
-0.2
plant
Upstate
+0.2
+0.0
N.D.
+0.3
-0.1
plant
Upstate
+0.2
-0.1
N.D.
+0.2
+0.1
plant
Norland
+0.1
+0.1
N.D.
+0.2
-0.1
carbon source
M9+sucrose
-0.0
-0.1
N.D.
+0.3
+0.2
carbon source
M9+glycerol
+0.1
+0.0
N.D.
+0.5
-0.0
plant
Upstate
+0.1
+0.2
N.D.
+0.0
+0.1
plant
Atlantic
-0.1
+0.2
N.D.
+0.5
-0.1
plant
Norland
+0.3
+0.0
N.D.
+0.4
+0.0
plant
Atlantic
+0.1
+0.4
N.D.
+0.2
+0.1
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