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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS13955 and HGI48_RS13960 are separated by 320 nucleotides
HGI48_RS13960 and HGI48_RS13965 are separated by 74 nucleotides
HGI48_RS13965 and HGI48_RS13970 are separated by 641 nucleotides
HGI48_RS13970 and HGI48_RS13975 are separated by 617 nucleotides
HGI48_RS13955: HGI48_RS13955 - type II toxin-antitoxin system CcdA family antitoxin, at 3,119,864 to 3,120,100
_RS13955
HGI48_RS13960: HGI48_RS13960 - DNA primase, at 3,120,421 to 3,120,591
_RS13960
HGI48_RS13965: HGI48_RS13965 - hypothetical protein, at 3,120,666 to 3,122,525
_RS13965
HGI48_RS13970: HGI48_RS13970 - DUF1738 domain-containing protein, at 3,123,167 to 3,123,943
_RS13970
HGI48_RS13975: HGI48_RS13975 - DNA cytosine methyltransferase, at 3,124,561 to 3,125,706
_RS13975
Group
Condition
HGI48
_RS13955
HGI48
_RS13960
HGI48
_RS13965
HGI48
_RS13970
HGI48
_RS13975
plant
Atlantic
N.D.
-0.7
-0.2
-0.1
-0.8
carbon source
M9+sucrose
N.D.
-0.2
+0.1
-0.1
-1.0
carbon source
M9+glycerol
N.D.
-0.3
-0.1
-0.1
-0.6
plant
Atlantic
N.D.
+0.2
-0.2
-0.1
-1.1
plant
Norland
N.D.
-0.0
-0.1
+0.2
-1.2
plant
Upstate
N.D.
-0.1
-0.1
-0.1
-0.8
plant
Atlantic
N.D.
+0.3
-0.3
-0.0
-1.0
plant
Upstate
N.D.
-0.1
-0.1
+0.1
-0.9
plant
Atlantic
N.D.
+0.2
-0.3
+0.0
-1.0
plant
Upstate
N.D.
+0.3
+0.1
-0.1
-1.1
plant
Norland
N.D.
+0.2
-0.1
+0.0
-0.9
plant
Norland
N.D.
+0.4
-0.1
-0.1
-0.9
plant
Upstate
N.D.
+0.2
+0.0
+0.0
-0.9
carbon source
M9+polygalacturonate
N.D.
-0.5
-0.0
+0.1
-0.2
carbon source
M9+glycerol
N.D.
+0.2
-0.3
+0.1
-0.7
plant
Atlantic
N.D.
+0.2
-0.0
+0.0
-0.8
plant
Atlantic
N.D.
+0.3
-0.3
-0.1
-0.5
carbon source
M9+sucrose
N.D.
+0.1
+0.1
-0.1
-0.6
plant
Norland
N.D.
+0.1
-0.1
+0.3
-0.7
carbon source
M9+sucrose
N.D.
+0.2
+0.3
+0.1
-0.9
control
LB
N.D.
+0.3
-0.1
-0.0
-0.5
plant
Norland
N.D.
+0.5
+0.1
+0.0
-0.8
control
LB
N.D.
+0.3
-0.1
+0.1
-0.5
carbon source
M9+glycerol
N.D.
+0.2
-0.1
+0.1
-0.4
plant
Upstate
N.D.
+0.5
-0.0
+0.1
-0.7
control
PDB
N.D.
+0.3
-0.0
+0.1
-0.4
carbon source
M9+glycerol
N.D.
+0.5
-0.2
-0.2
-0.1
carbon source
M9+polygalacturonate
N.D.
+0.4
+0.0
+0.2
-0.4
control
PDB
N.D.
+0.3
-0.0
+0.3
-0.2
control
PDB
N.D.
+0.5
-0.1
+0.2
-0.1
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