Fitness for 5 genes in Dickeya dianthicola 67-19

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500 ntHGI48_RS13855 and HGI48_RS13860 are separated by 112 nucleotidesHGI48_RS13860 and HGI48_RS13865 are separated by 712 nucleotidesHGI48_RS13865 and HGI48_RS13870 are separated by 99 nucleotidesHGI48_RS13870 and HGI48_RS13875 are separated by 365 nucleotides HGI48_RS13855: HGI48_RS13855 - type VI secretion system tip protein VgrG, at 3,086,457 to 3,088,313 _RS13855 HGI48_RS13860: HGI48_RS13860 - Hcp family type VI secretion system effector, at 3,088,426 to 3,088,944 _RS13860 HGI48_RS13865: HGI48_RS13865 - SDR family oxidoreductase, at 3,089,657 to 3,090,421 _RS13865 HGI48_RS13870: HGI48_RS13870 - alpha/beta hydrolase, at 3,090,521 to 3,091,543 _RS13870 HGI48_RS13875: HGI48_RS13875 - LysR family transcriptional regulator, at 3,091,909 to 3,092,811 _RS13875
Group Condition HGI48_RS13855 HGI48_RS13860 HGI48_RS13865 HGI48_RS13870 HGI48_RS13875
plant Upstate -0.4 N.D. -0.3 -0.2 -0.2
plant Upstate -0.5 N.D. -0.2 -0.1 -0.1
plant Atlantic -0.3 N.D. +0.0 -0.4 -0.1
plant Norland -0.4 N.D. -0.1 -0.1 -0.1
plant Atlantic -0.2 N.D. -0.1 +0.0 -0.4
plant Atlantic -0.3 N.D. -0.3 +0.1 -0.3
carbon source M9+polygalacturonate -0.5 N.D. -0.0 +0.1 -0.1
control PDB +0.2 N.D. -0.3 -0.2 -0.2
carbon source M9+glycerol +0.7 N.D. -0.3 -0.4 -0.5
control PDB -0.2 N.D. -0.2 +0.2 -0.3
carbon source M9+glycerol -0.1 N.D. -0.2 -0.2 +0.1
carbon source M9+glycerol -0.1 N.D. +0.1 -0.2 -0.1
plant Upstate -0.3 N.D. -0.2 +0.1 +0.0
plant Upstate -0.2 N.D. -0.2 +0.2 -0.2
plant Norland -0.1 N.D. +0.0 -0.4 +0.2
plant Atlantic +0.3 N.D. -0.1 +0.3 -0.8
plant Atlantic -0.2 N.D. -0.5 +0.4 +0.1
carbon source M9+polygalacturonate -0.1 N.D. -0.1 +0.3 -0.1
control LB +0.2 N.D. -0.0 -0.2 -0.1
plant Norland +0.3 N.D. -0.1 +0.0 -0.2
control PDB +0.4 N.D. -0.3 -0.1 +0.1
plant Atlantic +0.5 N.D. -0.1 +0.0 -0.3
control PDB +0.1 N.D. +0.1 +0.2 -0.3
carbon source M9+sucrose +0.2 N.D. +0.1 -0.2 +0.1
carbon source M9+glycerol +0.3 N.D. -0.3 +0.2 -0.1
plant Norland +0.3 N.D. -0.1 +0.1 -0.1
carbon source M9+sucrose +0.3 N.D. -0.2 +0.1 +0.1
plant Upstate +0.8 N.D. -0.0 -0.1 -0.3
plant Norland +0.5 N.D. -0.1 +0.2 -0.1
carbon source M9+polygalacturonate +0.3 N.D. -0.1 +0.3 -0.1
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