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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS13855 and HGI48_RS13860 are separated by 112 nucleotides
HGI48_RS13860 and HGI48_RS13865 are separated by 712 nucleotides
HGI48_RS13865 and HGI48_RS13870 are separated by 99 nucleotides
HGI48_RS13870 and HGI48_RS13875 are separated by 365 nucleotides
HGI48_RS13855: HGI48_RS13855 - type VI secretion system tip protein VgrG, at 3,086,457 to 3,088,313
_RS13855
HGI48_RS13860: HGI48_RS13860 - Hcp family type VI secretion system effector, at 3,088,426 to 3,088,944
_RS13860
HGI48_RS13865: HGI48_RS13865 - SDR family oxidoreductase, at 3,089,657 to 3,090,421
_RS13865
HGI48_RS13870: HGI48_RS13870 - alpha/beta hydrolase, at 3,090,521 to 3,091,543
_RS13870
HGI48_RS13875: HGI48_RS13875 - LysR family transcriptional regulator, at 3,091,909 to 3,092,811
_RS13875
Group
Condition
HGI48
_RS13855
HGI48
_RS13860
HGI48
_RS13865
HGI48
_RS13870
HGI48
_RS13875
plant
Upstate
-0.4
N.D.
-0.3
-0.2
-0.2
plant
Upstate
-0.5
N.D.
-0.2
-0.1
-0.1
plant
Atlantic
-0.3
N.D.
+0.0
-0.4
-0.1
plant
Norland
-0.4
N.D.
-0.1
-0.1
-0.1
plant
Atlantic
-0.2
N.D.
-0.1
+0.0
-0.4
plant
Atlantic
-0.3
N.D.
-0.3
+0.1
-0.3
carbon source
M9+polygalacturonate
-0.5
N.D.
-0.0
+0.1
-0.1
control
PDB
+0.2
N.D.
-0.3
-0.2
-0.2
carbon source
M9+glycerol
+0.7
N.D.
-0.3
-0.4
-0.5
control
PDB
-0.2
N.D.
-0.2
+0.2
-0.3
carbon source
M9+glycerol
-0.1
N.D.
-0.2
-0.2
+0.1
carbon source
M9+glycerol
-0.1
N.D.
+0.1
-0.2
-0.1
plant
Upstate
-0.3
N.D.
-0.2
+0.1
+0.0
plant
Upstate
-0.2
N.D.
-0.2
+0.2
-0.2
plant
Norland
-0.1
N.D.
+0.0
-0.4
+0.2
plant
Atlantic
+0.3
N.D.
-0.1
+0.3
-0.8
plant
Atlantic
-0.2
N.D.
-0.5
+0.4
+0.1
carbon source
M9+polygalacturonate
-0.1
N.D.
-0.1
+0.3
-0.1
control
LB
+0.2
N.D.
-0.0
-0.2
-0.1
plant
Norland
+0.3
N.D.
-0.1
+0.0
-0.2
control
PDB
+0.4
N.D.
-0.3
-0.1
+0.1
plant
Atlantic
+0.5
N.D.
-0.1
+0.0
-0.3
control
PDB
+0.1
N.D.
+0.1
+0.2
-0.3
carbon source
M9+sucrose
+0.2
N.D.
+0.1
-0.2
+0.1
carbon source
M9+glycerol
+0.3
N.D.
-0.3
+0.2
-0.1
plant
Norland
+0.3
N.D.
-0.1
+0.1
-0.1
carbon source
M9+sucrose
+0.3
N.D.
-0.2
+0.1
+0.1
plant
Upstate
+0.8
N.D.
-0.0
-0.1
-0.3
plant
Norland
+0.5
N.D.
-0.1
+0.2
-0.1
carbon source
M9+polygalacturonate
+0.3
N.D.
-0.1
+0.3
-0.1
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