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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS13530 and HGI48_RS13535 are separated by 144 nucleotides
HGI48_RS13535 and HGI48_RS13540 are separated by 4 nucleotides
HGI48_RS13540 and HGI48_RS13545 are separated by 76 nucleotides
HGI48_RS13545 and HGI48_RS13550 are separated by 13 nucleotides
HGI48_RS13530: HGI48_RS13530 - flagellar basal body P-ring formation protein FlgA, at 2,961,690 to 2,962,358
_RS13530
HGI48_RS13535: HGI48_RS13535 - anti-sigma-28 factor FlgM, at 2,962,503 to 2,962,802
_RS13535
HGI48_RS13540: HGI48_RS13540 - flagellar export chaperone FlgN, at 2,962,807 to 2,963,244
_RS13540
HGI48_RS13545: HGI48_RS13545 - flagellar protein FlhE, at 2,963,321 to 2,963,743
_RS13545
HGI48_RS13550: HGI48_RS13550 - flagellar biosynthesis protein FlhA, at 2,963,757 to 2,965,844
_RS13550
Group
Condition
HGI48
_RS13530
HGI48
_RS13535
HGI48
_RS13540
HGI48
_RS13545
HGI48
_RS13550
plant
Atlantic
-0.1
-1.8
-0.6
-0.2
-0.1
control
PDB
+0.0
-0.8
-1.3
+0.1
-0.1
carbon source
M9+sucrose
-0.4
-0.7
-0.2
-0.6
-0.0
control
PDB
-0.1
-0.5
-1.0
-0.1
+0.0
control
PDB
-0.1
-0.6
-0.9
+0.2
-0.2
control
PDB
-0.1
-1.2
-0.7
+0.6
+0.1
carbon source
M9+sucrose
-0.5
-0.4
-0.1
+0.4
-0.4
control
PDB
-0.2
-0.7
-0.3
+0.5
-0.2
plant
Upstate
+0.2
-0.5
+0.2
-1.0
+0.3
plant
Atlantic
+0.4
-0.3
+0.2
-1.0
+0.5
plant
Norland
+0.4
-0.2
+0.5
-1.4
+0.4
plant
Atlantic
-0.3
+0.8
+0.5
-1.4
+0.3
carbon source
M9+glycerol
+0.3
-0.1
-0.2
-0.9
+0.8
control
LB
+0.4
+0.0
+0.1
-1.0
+0.5
plant
Atlantic
+0.4
-0.0
+0.2
-0.8
+0.3
plant
Upstate
+0.4
-0.3
+0.1
-0.6
+0.6
control
LB
+0.3
-0.5
+0.3
-0.3
+0.5
carbon source
M9+glycerol
+1.2
-0.1
-1.1
-0.7
+1.2
plant
Upstate
+0.4
+0.4
+0.1
-0.9
+0.5
plant
Norland
+0.6
-0.0
+0.2
-0.5
+0.4
plant
Atlantic
+0.7
+0.1
+0.3
-0.3
+0.5
plant
Atlantic
+0.6
-0.1
+0.7
+0.1
+0.5
plant
Upstate
+0.8
+0.0
+0.4
-0.2
+0.7
carbon source
M9+glycerol
+1.0
-0.1
+0.2
-0.2
+1.1
carbon source
M9+polygalacturonate
+1.2
-0.5
+0.4
-0.5
+1.4
carbon source
M9+glycerol
+1.2
+0.2
+0.6
-0.6
+1.3
carbon source
M9+polygalacturonate
+1.2
-0.6
+1.0
-0.2
+1.4
carbon source
M9+glycerol
+1.3
+0.0
+0.1
+0.2
+1.5
carbon source
M9+glycerol
+1.0
+0.4
+0.4
+0.2
+1.2
carbon source
M9+polygalacturonate
+1.3
+0.1
+0.8
-0.1
+1.7
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