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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS13475 and HGI48_RS13480 are separated by 32 nucleotides
HGI48_RS13480 and HGI48_RS13485 are separated by 121 nucleotides
HGI48_RS13485 and HGI48_RS13490 overlap by 1 nucleotides
HGI48_RS13490 and HGI48_RS13495 are separated by 16 nucleotides
HGI48_RS13475: HGI48_RS13475 - flagellar hook-associated protein FlgL, at 2,951,197 to 2,952,126
_RS13475
HGI48_RS13480: HGI48_RS13480 - flagellar hook-associated protein FlgK, at 2,952,159 to 2,954,081
_RS13480
HGI48_RS13485: HGI48_RS13485 - flagellar assembly peptidoglycan hydrolase FlgJ, at 2,954,203 to 2,955,153
_RS13485
HGI48_RS13490: HGI48_RS13490 - flagellar basal body P-ring protein FlgI, at 2,955,153 to 2,956,262
_RS13490
HGI48_RS13495: HGI48_RS13495 - flagellar basal body L-ring protein FlgH, at 2,956,279 to 2,956,995
_RS13495
Group
Condition
HGI48
_RS13475
HGI48
_RS13480
HGI48
_RS13485
HGI48
_RS13490
HGI48
_RS13495
carbon source
M9+sucrose
+0.2
+0.4
-0.9
-0.9
-0.3
carbon source
M9+sucrose
+0.2
+0.4
-0.3
-0.7
+0.2
control
PDB
+0.6
+0.7
-0.2
+0.1
-0.2
control
PDB
+0.5
+0.5
-0.1
+0.1
+0.2
control
PDB
+0.6
+0.7
-0.3
+0.1
+0.1
control
LB
+0.3
+0.0
+0.1
+0.5
+0.3
control
PDB
+0.6
+0.8
+0.0
+0.0
-0.0
plant
Norland
-0.1
+0.2
+0.5
+0.6
+0.3
plant
Norland
+0.3
+0.2
+0.3
+0.4
+0.3
plant
Atlantic
-0.5
+0.5
+0.4
+0.7
+0.6
plant
Atlantic
+0.4
+0.1
+0.4
+0.5
+0.4
control
PDB
+0.5
+0.7
-0.1
+0.4
+0.2
carbon source
M9+glycerol
-0.2
-0.4
+0.7
+1.0
+0.6
carbon source
M9+glycerol
-0.2
-0.4
+0.8
+0.9
+0.9
plant
Norland
+0.4
+0.4
+0.1
+0.6
+0.5
plant
Atlantic
+0.2
+0.3
+0.3
+0.9
+0.3
carbon source
M9+glycerol
-0.1
-0.3
+0.6
+1.1
+1.0
plant
Norland
+0.6
+0.3
+0.5
+0.5
+0.5
plant
Upstate
+0.3
+0.3
+0.6
+0.5
+0.7
plant
Upstate
+0.5
+0.5
+0.4
+0.4
+0.7
plant
Norland
+0.2
+0.4
+0.4
+0.8
+0.6
carbon source
M9+glycerol
-0.0
-0.5
+1.0
+0.9
+1.1
plant
Atlantic
+0.6
+0.3
+0.8
+0.6
+0.6
carbon source
M9+glycerol
-0.1
-0.3
+1.1
+1.2
+1.2
plant
Upstate
+0.7
+0.3
+0.5
+1.0
+0.8
plant
Upstate
+0.5
+0.6
+0.6
+0.9
+0.9
carbon source
M9+glycerol
+0.5
+0.3
+1.4
+1.4
+1.5
carbon source
M9+polygalacturonate
+1.2
+1.3
+1.1
+0.8
+1.5
carbon source
M9+polygalacturonate
+1.1
+1.4
+1.1
+1.0
+1.4
carbon source
M9+polygalacturonate
+1.0
+1.2
+1.2
+1.0
+1.7
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