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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola 67-19
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HGI48_RS13430 and HGI48_RS13435 are separated by 2 nucleotides
HGI48_RS13435 and HGI48_RS13440 are separated by 133 nucleotides
HGI48_RS13440 and HGI48_RS13445 are separated by 5 nucleotides
HGI48_RS13445 and HGI48_RS13450 overlap by 8 nucleotides
HGI48_RS13430: HGI48_RS13430 - flagella biosynthesis chaperone FliJ, at 2,944,915 to 2,945,355
_RS13430
HGI48_RS13435: HGI48_RS13435 - flagellar hook-length control protein FliK, at 2,945,358 to 2,946,689
_RS13435
HGI48_RS13440: HGI48_RS13440 - flagellar basal body-associated protein FliL, at 2,946,823 to 2,947,311
_RS13440
HGI48_RS13445: HGI48_RS13445 - flagellar motor switch protein FliM, at 2,947,317 to 2,948,333
_RS13445
HGI48_RS13450: HGI48_RS13450 - flagellar motor switch protein FliN, at 2,948,326 to 2,948,742
_RS13450
Group
Condition
HGI48
_RS13430
HGI48
_RS13435
HGI48
_RS13440
HGI48
_RS13445
HGI48
_RS13450
carbon source
M9+sucrose
-0.5
-0.7
-0.8
-0.4
-0.5
carbon source
M9+sucrose
-0.2
-0.2
-0.2
-0.2
-0.9
plant
Atlantic
-0.7
-0.2
-0.2
-0.2
-0.3
control
PDB
-0.5
-0.3
-0.4
-0.3
+0.1
control
PDB
-0.3
-0.2
-0.2
-0.3
+0.1
plant
Upstate
-0.1
+0.2
+0.1
+0.2
+0.5
plant
Norland
-0.3
+0.5
+0.2
+0.3
+0.4
plant
Upstate
+0.4
+0.2
-0.1
+0.4
+0.4
plant
Atlantic
+0.1
+0.2
+0.2
+0.4
+0.5
plant
Norland
+0.3
+0.3
+0.0
+0.4
+0.5
plant
Atlantic
+0.2
+0.5
+0.3
+0.4
+0.2
plant
Norland
+0.2
+0.5
-0.1
+0.5
+0.5
control
LB
+0.3
+0.3
+0.2
+0.4
+0.6
control
LB
+0.1
+0.4
+0.3
+0.5
+0.5
control
LB
+0.0
+0.4
+0.3
+0.4
+0.7
plant
Norland
+0.5
+0.2
+0.3
+0.3
+0.5
plant
Atlantic
+0.6
+0.6
+0.2
+0.6
+0.3
plant
Atlantic
+0.4
+0.3
+0.5
+0.5
+0.7
plant
Upstate
+0.7
+0.4
+0.4
+0.6
+0.3
carbon source
M9+glycerol
+0.5
+0.4
+0.3
+0.7
+0.6
plant
Upstate
+0.7
+0.4
+0.3
+0.4
+0.8
plant
Upstate
+0.6
+0.8
+0.6
+0.8
+0.9
carbon source
M9+glycerol
+0.7
+0.5
+0.3
+1.3
+1.2
carbon source
M9+glycerol
+0.8
+0.7
+0.9
+1.0
+1.1
carbon source
M9+glycerol
+0.6
+0.8
+0.9
+1.1
+1.0
carbon source
M9+glycerol
+0.9
+0.8
+0.8
+1.3
+1.4
carbon source
M9+polygalacturonate
+1.3
+0.6
+1.1
+1.6
+1.4
carbon source
M9+polygalacturonate
+1.4
+0.8
+1.0
+1.7
+1.2
carbon source
M9+polygalacturonate
+1.1
+0.9
+1.0
+1.8
+1.2
carbon source
M9+glycerol
+1.4
+1.1
+1.2
+1.5
+1.6
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